Amborella_trichopoda
| References | Reference_title |
|---|---|
| The Amborella Genome and the Evolution of Flowering Plants |
| Database_name | Phytozome |
|---|
Euryale_ferox
| References | Reference_title |
|---|---|
| Prickly waterlily and rigid hornwort genomes shed light on early angiosperm evolution |
| Database_name | CoGe |
|---|
Nymphaea_colorata
| References | Reference_title |
|---|---|
| The water lily genome and the early evolution of flowering plants |
| Database_name | Phytozome |
|---|
Nymphaea_thermarum
| References | Reference_title |
|---|---|
| Water lily (Nymphaea thermarum) genome reveals variable genomic signatures of ancient vascular cambium losses |
| Database_name | NCBI |
|---|
Annona_cherimola
| References | Reference_title |
|---|---|
| Genomics in neglected and underutilized fruit crops: A chromosome-scale genome sequence of cherimoya (Annona cherimola). |
| Database_name | Selfdb |
|---|
Magnolia_biondii
| References | Reference_title |
|---|---|
| The genome of Magnolia biondii Pamp. provides insights into the evolution of Magnoliales and biosynthesis of terpenoids |
| Database_name | Dryad |
|---|
Aristolochia_contorta
| References | Reference_title |
|---|---|
| Chromosome-level genome assembly of Aristolochia contorta provides insights into the biosynthesis of benzylisoquinoline alkaloids and aristolochic acids |
| Database_name | CoGe |
|---|
Saururus_chinensis
| References | Reference_title |
|---|---|
| The Saururus chinensis genome provides insights into the evolution of pollination strategies and herbaceousness in Magnoliidae |
| Database_name | NGDC |
|---|
Aristolochia_fimbriata
| References | Reference_title |
|---|---|
| Insights into angiosperm evolution, floral development and chemical biosynthesis from the Aristolochia fimbriata genome |
| Database_name | NCBI |
|---|
Brasenia_schreberi
| Database_name | CNSA |
|---|
Chimonanthus_salicifolius
| References | Reference_title |
|---|---|
| The Chimonanthus Salicifolius Genome Provides Insight Into Magnoliid Evolution and Flavonoid Biosynthesis. |
| Database_name | Selfdb |
|---|
Cinnamomum_kanehirae
| References | Reference_title |
|---|---|
| Stout camphor tree genome fills gaps in understanding of flowering plant genome evolution |
| Database_name | Phytozome |
|---|
Persea_americana
| References | Reference_title |
|---|---|
| A haplotype resolved chromosomal level avocado genome allows analysis of novel avocado genes. |
| Database_name | NCBI |
|---|
Phoebe_bournei
| References | Reference_title |
|---|---|
| The chromosome-scale genome of Phoebe bournei reveals contrasting fates of terpene synthase (TPS)-a and TPS-b subfamilies. |
| Database_name | CNSA |
|---|
Chloranthus_spicatus
| References | Reference_title |
|---|---|
| Chloranthus genome provides insights into the early diversification of angiosperms |
| Database_name | CNGB |
|---|
Acanthochlamys_bracteata
| Database_name | NGDC |
|---|
Achnatherum_splendens
| References | Reference_title |
|---|---|
| The genome sequence provides insights into salt tolerance of Achnatherum splendens (Gramineae), a constructive species of alkaline grassland |
| Database_name | NGDC |
|---|
Aegilops_bicornis
| References | Reference_title |
|---|---|
| Genome sequences of the five Sitopsis species of Aegilops and the origin of polyploid wheat B-subgenome. |
| Database_name | NGDC |
|---|
Aegilops_longissima
| References | Reference_title |
|---|---|
| Genome sequences of three Aegilops species of the section Sitopsis reveal phylogenetic relationships and provide resources for wheat improvement. |
| Database_name | NGDC |
|---|
Aegilops_searsii
| References | Reference_title |
|---|---|
| Genome sequences of the five Sitopsis species of Aegilops and the origin of polyploid wheat B-subgenome. |
| Database_name | NGDC |
|---|
Aegilops_sharonensis
| References | Reference_title |
|---|---|
| Aegilops sharonensis genome-assisted identification of stem rust resistance gene Sr62. |
| Database_name | NGDC |
|---|
Aegilops_speltoides
| References | Reference_title |
|---|---|
| Genome sequencing of Sitopsis species provides insights into their contribution to the B subgenome of bread wheat. |
| Database_name | NGDC |
|---|
Aegilops_tauschii
| References | Reference_title |
|---|---|
| The Aegilops tauschii genome reveals multiple impacts of transposons |
| Database_name | NCBI |
|---|
Aegilops_umbellulata
| References | Reference_title |
|---|---|
| Chromosome-scale assembly of the wild wheat relative Aegilops umbellulata. |
| Database_name | DRYAD |
|---|
Ananas_comosus
| References | Reference_title |
|---|---|
| The draft genome of MD-2 pineapple using hybrid error correction of long reads |
| Database_name | Phytozome |
|---|
Avena_atlantica
| References | Reference_title |
|---|---|
| Genomic insights from the first chromosome-scale assemblies of oat (Avena spp.) diploid species |
| Database_name | CoGe |
|---|
Avena_eriantha
| References | Reference_title |
|---|---|
| Genomic insights from the first chromosome-scale assemblies of oat (Avena spp.) diploid species |
| Database_name | CoGe |
|---|
Avena_strigosa
| References | Reference_title |
|---|---|
| Genomic insights from the first chromosome-scale assemblies of oat (Avena spp.) diploid species |
| Database_name | CoGe |
|---|
Bonia_amplexicaulis
| References | Reference_title |
|---|---|
| Genome Sequences Provide Insights into the Reticulate Origin and Unique Traits of Woody Bamboos |
| Database_name | Bamboo genome database |
|---|
Bothriochloa_decipiens
| References | Reference_title |
|---|---|
| Genome assembly of an Australian native grass species reveals a recent whole-genome duplication and biased gene retention of genes involved in stress response. |
| Database_name | GigaDB |
|---|
Brachypodium_distachyon
| References | Reference_title |
|---|---|
| Genome sequencing and analysis of the model grass Brachypodium distachyon |
| Database_name | Phytozome |
|---|
Brachypodium_hybridum
| References | Reference_title |
|---|---|
| Gradual polyploid genome evolution revealed by pan-genomic analysis of Brachypodium hybridum and its diploid progenitors |
| Database_name | Phytozome |
|---|
Brachypodium_stace
| References | Reference_title |
|---|---|
| Gradual polyploid genome evolution revealed by pan-genomic analysis of Brachypodium hybridum and its diploid progenitors |
| Database_name | Phytozome |
|---|
Brachypodium_sylvaticum
| References | Reference_title |
|---|---|
| The reference genome and abiotic stress responses of the model perennial grass Brachypodium sylvaticum. |
| Database_name | JGI |
|---|
Bromus_tectorum
| References | Reference_title |
|---|---|
| Preadapted to adapt: underpinnings of adaptive plasticity revealed by the downy brome genome. |
| Database_name | COGE |
|---|
Carex_cristatella
| References | Reference_title |
|---|---|
| Chromosome scale genome assemblies and annotations for Poales species Carex cristatella, Carex scoparia, Juncus effusus and Juncus inflexus. |
| Database_name | DRYAD |
|---|
Carex_scoparia
| References | Reference_title |
|---|---|
| Chromosome scale genome assemblies and annotations for Poales species Carex cristatella, Carex scoparia, Juncus effusus and Juncus inflexus. |
| Database_name | DRYAD |
|---|
Cenchrus_americanus
| References | Reference_title |
|---|---|
| An improved assembly of the pearl millet reference genome using Oxford Nanopore long reads and optical mapping. |
| Database_name | EBI |
|---|
Cenchrus_purpureus
| References | Reference_title |
|---|---|
| The elephant grass (Cenchrus purpureus) genome provides insights into anthocyanidin accumulation and fast growth |
| Database_name | NGDC |
|---|
Cleistogenes_songorica
| References | Reference_title |
|---|---|
| The genome of Cleistogenes songorica provides a blueprint for functional dissection of dimorphic flower differentiation and drought adaptability |
| Database_name | NGDC |
|---|
Coix_lacrymajobi
| References | Reference_title |
|---|---|
| Genome Assembly and Annotation of Soft-Shelled Adlay (Coix lacryma-jobi Variety ma-yuen), a Cereal and Medicinal Crop in the Poaceae Family |
| Database_name | Coix lacryma-jobi Genome DB |
|---|
Cyperus_esculentus
| References | Reference_title |
|---|---|
| Chromosome-scale genome assembly of the yellow nutsedge (Cyperus esculentus). |
| Database_name | CNSA |
|---|
Dendrocalamus_latiflorus
| References | Reference_title |
|---|---|
| Allele-aware chromosome-scale assembly of the allopolyploid genome of hexaploid Ma bamboo (Dendrocalamus latiflorus Munro) |
| Database_name | SelfDB |
|---|
Dichanthelium_oligosanthes
| References | Reference_title |
|---|---|
| The draft genome of the C3 panicoid grass species Dichanthelium oligosanthes |
| Database_name | NCBI |
|---|
Digitaria_exilis
| References | Reference_title |
|---|---|
| Genome sequence and genetic diversity analysis of an under-domesticated orphan crop, white fonio (Digitaria exilis) |
| Database_name | NCBI |
|---|
Echinochloa_colona
| References | Reference_title |
|---|---|
| Genomic insights into the evolution of Echinochloa species as weed and orphan crop |
| Database_name | NGDC |
|---|
Echinochloa_crus-galli
| References | Reference_title |
|---|---|
| Genomic insights into the evolution of Echinochloa species as weed and orphan crop. |
| Database_name | NGDC |
|---|
Echinochloa_crusgalli
| References | Reference_title |
|---|---|
| Genomic insights into the evolution of Echinochloa species as weed and orphan crop |
| Database_name | NGDC |
|---|
Echinochloa_haploclada
| References | Reference_title |
|---|---|
| The Genomes of the Allohexaploid Echinochloa crus-galli and Its Progenitors Provide Insights into Polyploidization-Driven Adaptation. |
| Database_name | Selfdb |
|---|
Echinochloa_oryzicola
| References | Reference_title |
|---|---|
| Genomic insights into the evolution of Echinochloa species as weed and orphan crop |
| Database_name | NGDC |
|---|
Eleusine_coracana
| References | Reference_title |
|---|---|
| Genome analyses reveal population structure and a purple stigma color gene candidate in finger millet. |
| Database_name | JGI |
|---|
Eleusine_indica
| References | Reference_title |
|---|---|
| Subtelomeric 5-enolpyruvylshikimate-3-phosphate synthase copy number variation confers glyphosate resistance in Eleusine indica. |
| Database_name | COGE |
|---|
Eragrostis_curvula
| References | Reference_title |
|---|---|
| A high-quality genome of Eragrostis curvula grass provides insights into Poaceae evolution and supports new strategies to enhance forage quality |
| Database_name | NCBI |
|---|
Eragrostis_nindensis
| References | Reference_title |
|---|---|
| Intertwined signatures of desiccation and drought tolerance in grasses. |
| Database_name | COGE |
|---|
Eragrostis_tef
| References | Reference_title |
|---|---|
| Exceptional subgenome stability and functional divergence in the allotetraploid Ethiopian cereal teff. |
| Database_name | COGE |
|---|
Eremochloa_ophiuroides
| Database_name | Figshare |
|---|
Erianthus_fulvus
Erianthus_rufipilus
| References | Reference_title |
|---|---|
| A complete gap-free diploid genome in Saccharum complex and the genomic footprints of evolution in the highly polyploid Saccharum genus. |
| Database_name | Selfdb |
|---|
Guadua_angustifolia
| References | Reference_title |
|---|---|
| Genome Sequences Provide Insights into the Reticulate Origin and Unique Traits of Woody Bamboos |
| Database_name | Bamboo genome database |
|---|
Hordeum_marinum
| References | Reference_title |
|---|---|
| The genome and gene editing system of sea barleygrass provide a novel platform for cereal domestication and stress tolerance studies |
| Database_name | NGDC |
|---|
Hordeum_spontaneum
| References | Reference_title |
|---|---|
| High-quality wild barley genome assemblies and annotation with Nanopore long reads and Hi-C sequencing data. |
| Database_name | Figshare |
|---|
Hordeum_vulgare
| References | Reference_title |
|---|---|
| A chromosome conformation capture ordered sequence of the barley genome. |
| Database_name | PLAZA |
|---|
Juncus_effusus
| References | Reference_title |
|---|---|
| Chromosome scale genome assemblies and annotations for Poales species Carex cristatella, Carex scoparia, Juncus effusus and Juncus inflexus. |
| Database_name | DRYAD |
|---|
Juncus_inflexus
| References | Reference_title |
|---|---|
| Chromosome scale genome assemblies and annotations for Poales species Carex cristatella, Carex scoparia, Juncus effusus and Juncus inflexus. |
| Database_name | DRYAD |
|---|
Kobresia_littledalei
| References | Reference_title |
|---|---|
| Genome sequence of Kobresia littledalei, the first chromosome-level genome in the family Cyperaceae |
| Database_name | NCBI |
|---|
Leersia_perrieri
| References | Reference_title |
|---|---|
| Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza |
| Database_name | CyVerse Data Commons |
|---|
Lolium_perenne
| References | Reference_title |
|---|---|
| Chromosome-scale assembly and annotation of the perennial ryegrass genome. |
| Database_name | PLAZA |
|---|
Lolium_rigidum
| References | Reference_title |
|---|---|
| Rounding up the annual ryegrass genome: High-quality reference genome of Lolium rigidum |
| Database_name | NCBI |
|---|
Miscanthus_lutarioriparius
| References | Reference_title |
|---|---|
| Chromosome-scale assembly and analysis of biomass crop Miscanthus lutarioriparius genome. |
| Database_name | Figshare |
|---|
Miscanthus_sinensis
| References | Reference_title |
|---|---|
| Genome biology of the paleotetraploid perennial biomass crop Miscanthus |
| Database_name | Phytozome |
|---|
Olyra_latifolia
| References | Reference_title |
|---|---|
| Genome Sequences Provide Insights into the Reticulate Origin and Unique Traits of Woody Bamboos |
| Database_name | Bamboo genome database |
|---|
Oropetium_thomaeum
| References | Reference_title |
|---|---|
| A chromosome-scale assembly of the model desiccation tolerant grass Oropetium thomaeum. |
| Database_name | JGI |
|---|
Oryza_alta
| References | Reference_title |
|---|---|
| A route to de novo domestication of wild allotetraploid rice. |
| Database_name | NGDC |
|---|
Oryza_barthii
| References | Reference_title |
|---|---|
| Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza |
| Database_name | CyVerse Data Commons |
|---|
Oryza_brachyantha
| References | Reference_title |
|---|---|
| Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza |
| Database_name | CyVerse Data Commons |
|---|
Oryza_coarctata
| References | Reference_title |
|---|---|
| Draft genome and transcriptome analyses of halophyte rice Oryza coarctata provide resources for salinity and submergence stress response factors. |
| Database_name | NGDC |
|---|
Oryza_glaberrima
| References | Reference_title |
|---|---|
| Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza |
| Database_name | CyVerse Data Commons |
|---|
Oryza_glumaepatula
| References | Reference_title |
|---|---|
| Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza |
| Database_name | CyVerse Data Commons |
|---|
Oryza_granulata
| References | Reference_title |
|---|---|
| The draft genome sequence of an upland wild rice species, Oryza granulata. |
| Database_name | NGDC |
|---|
Oryza_meridionalis
| References | Reference_title |
|---|---|
| Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza |
| Database_name | CyVerse Data Commons |
|---|
Oryza_nivara
| References | Reference_title |
|---|---|
| Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza |
| Database_name | CyVerse Data Commons |
|---|
Oryza_punctata
| References | Reference_title |
|---|---|
| Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza |
| Database_name | CyVerse Data Commons |
|---|
Oryza_rufipogon
| References | Reference_title |
|---|---|
| Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza |
| Database_name | CyVerse Data Commons |
|---|
Oryza_sativa
| References | Reference_title |
|---|---|
| Chromosomal-level genome assembly of the semi-dwarf rice Taichung Native 1, an initiator of Green Revolution |
| Database_name | Phytozome |
|---|
Panicum_hallii
| References | Reference_title |
|---|---|
| The genomic landscape of molecular responses to natural drought stress in Panicum hallii |
| Database_name | Phytozome |
|---|
Panicum_miliaceum
| References | Reference_title |
|---|---|
| Biased mutations and gene losses underlying diploidization of the tetraploid broomcorn millet genome |
| Database_name | Zenodo |
|---|
Panicum_virgatum
| References | Reference_title |
|---|---|
| Genomic mechanisms of climate adaptation in polyploid bioenergy switchgrass |
| Database_name | Phytozome |
|---|
Paspalum_vaginatum
| References | Reference_title |
|---|---|
| Genome of Paspalum vaginatum and the role of trehalose mediated autophagy in increasing maize biomass |
| Database_name | phytozome |
|---|
Pennisetum_purpureum
| References | Reference_title |
|---|---|
| Chromosome-scale genome assembly provides insights into speciation of allotetraploid and massive biomass accumulation of elephant grass (Pennisetum purpureum Schum.) |
| Database_name | Figshare |
|---|
Pharus_latifolius
| References | Reference_title |
|---|---|
| The Pharus latifolius genome bridges the gap of early grass evolution. |
| Database_name | Selfdb |
|---|
Phragmites_australis
| References | Reference_title |
|---|---|
| Novel genome characteristics contribute to the invasiveness of Phragmites australis (common reed) |
| Database_name | CoGe |
|---|
Phyllostachys_edulis
| References | Reference_title |
|---|---|
| Chromosome-level reference genome and alternative splicing atlas of moso bamboo (Phyllostachys edulis) |
| Database_name | GigaDB |
|---|
Raddia_distichophylla
| References | Reference_title |
|---|---|
| Draft genome of the herbaceous bamboo Raddia distichophylla. |
| Database_name | NGDC |
|---|
Raddia_guianensis
| References | Reference_title |
|---|---|
| Genome sequences provide insights into the reticulate origin and unique traits of woody bamboos. |
| Database_name | Selfdb |
|---|
Rhynchospora_breviuscula
| References | Reference_title |
|---|---|
| Repeat-based holocentromeres influence genome architecture and karyotype evolution. |
| Database_name | Selfdb |
|---|
Rhynchospora_pubera
| References | Reference_title |
|---|---|
| Repeat-based holocentromeres influence genome architecture and karyotype evolution. |
| Database_name | Selfdb |
|---|
Rhynchospora_tenuis
| References | Reference_title |
|---|---|
| Repeat-based holocentromeres influence genome architecture and karyotype evolution. |
| Database_name | Selfdb |
|---|
Saccharum_hybrid
| References | Reference_title |
|---|---|
| A mosaic monoploid reference sequence for the highly complex genome of sugarcane |
| Database_name | sugarcane genome hub |
|---|
Saccharum_spontaneum
| References | Reference_title |
|---|---|
| Allele-defined genome of the autopolyploid sugarcane Saccharum spontaneum L. |
| Database_name | The Ming Laboratory |
|---|
Saccharum_sppR570
| References | Reference_title |
|---|---|
| A mosaic monoploid reference sequence for the highly complex genome of sugarcane |
| Database_name | sugarcane genome hub |
|---|
Secale_cereale
| References | Reference_title |
|---|---|
| Chromosome-scale genome assembly provides insights into rye biology, evolution and agronomic potential |
| Database_name | e!DAL |
|---|
Setaria_italica
| References | Reference_title |
|---|---|
| Genome sequence of foxtail millet (Setaria italica) provides insights into grass evolution and biofuel potential |
| Database_name | Phytozome |
|---|
Setaria_viridis
| References | Reference_title |
|---|---|
| Reference Genome for the Highly Transformable Setaria viridis ME034V |
| Database_name | Phytozome |
|---|
Sorghum_bicolor
| References | Reference_title |
|---|---|
| A chromosome-scale assembly of the sorghum genome using nanopore sequencing and optical mapping |
| Database_name | Phytozome |
|---|
Sparganium_stoloniferum
| References | Reference_title |
|---|---|
| Genomic analysis of the emergent aquatic plant Sparganium stoloniferum provides insights into its clonality, local adaptation and demographic history. |
| Database_name | Figshare |
|---|
Sporobolus_pyramidalis
| References | Reference_title |
|---|---|
| A comparative genomics examination of desiccation tolerance and sensitivity in two sister grass species |
| Database_name | CoGe |
|---|
Sporobolus_stapfianus
| References | Reference_title |
|---|---|
| A comparative genomics examination of desiccation tolerance and sensitivity in two sister grass species |
| Database_name | CoGe |
|---|
Thinopyrum_elongatum
| References | Reference_title |
|---|---|
| Horizontal gene transfer of Fhb7 from fungus underlies Fusarium head blight resistance in wheat. |
| Database_name | NGDC |
|---|
Triticum_aestivum
| References | Reference_title |
|---|---|
| Multiple wheat genomes reveal global variation in modern breeding |
| Database_name | EnsemblPlants |
|---|
Triticum_monococcum
| References | Reference_title |
|---|---|
| Einkorn genomics sheds light on history of the oldest domesticated wheat. |
| Database_name | DRYAD |
|---|
Triticum_turgidum
| References | Reference_title |
|---|---|
| Durum wheat genome highlights past domestication signatures and future improvement targets |
| Database_name | NCBI |
|---|
Triticum_urartu
| References | Reference_title |
|---|---|
| Genome sequence of the progenitor of wheat A subgenome Triticum urartu |
| Database_name | MBKBASE |
|---|
Zizania_latifolia
| References | Reference_title |
|---|---|
| A host plant genome (Zizania latifolia) after a centuryâ€long endophyte infection |
| Database_name | NCBI |
|---|
Zoysia_japonica
| References | Reference_title |
|---|---|
| Sequencing and comparative analyses of the genomes of zoysiagrasses |
| Database_name | Zoysia Genome Database |
|---|
Zoysia_matrella
| References | Reference_title |
|---|---|
| Sequencing and comparative analyses of the genomes of zoysiagrasses |
| Database_name | Zoysia Genome Database |
|---|
Zoysia_pacifica
| References | Reference_title |
|---|---|
| Sequencing and comparative analyses of the genomes of zoysiagrasses |
| Database_name | Zoysia Genome Database |
|---|
Acorus_calamus
| References | Reference_title |
|---|---|
| Diploid and tetraploid genomes of Acorus and the evolution of monocots. |
| Database_name | NGDC |
|---|
Acorus_gramineus
| References | Reference_title |
|---|---|
| The genome of Acorus deciphers insights into early monocot evolution. |
| Database_name | NGDC |
|---|
Allium_cepa
| References | Reference_title |
|---|---|
| Insights from the first genome assembly of Onion (Allium cepa) |
| Database_name | Onion Genome Sequencing |
|---|
Allium_fistulosum
| Database_name | CNSA |
|---|
Allium_sativum
| References | Reference_title |
|---|---|
| A Chromosome-Level Genome Assembly of Garlic (Allium sativum) Provides Insights into Genome Evolution and Allicin Biosynthesis |
| Database_name | Figshare |
|---|
Apostasia_shenzhenica
Asparagus_officinalis
| References | Reference_title |
|---|---|
| The asparagus genome sheds light on the origin and evolution of a young Y chromosome |
| Database_name | Phytozome |
|---|
Asparagus_setaceus
| References | Reference_title |
|---|---|
| Chromosome-level genome assembly, annotation and evolutionary analysis of the ornamental plant Asparagus setaceus |
| Database_name | Dryad |
|---|
Cymbidium_ensifolium
| References | Reference_title |
|---|---|
| The Cymbidium genome reveals the evolution of unique morphological traits |
| Database_name | CNGB |
|---|
Dendrobium_catenatum
| References | Reference_title |
|---|---|
| The Dendrobium catenatum Lindl. genome sequence provides insights into polysaccharide synthase, floral development and adaptive evolution |
| Database_name | NCBI |
|---|
Dendrobium_chrysotoxum
| References | Reference_title |
|---|---|
| Chromosome-scale assembly of the Dendrobium chrysotoxum genome enhances the understanding of orchid evolution |
| Database_name | NCBI |
|---|
Dendrobium_huoshanense
| References | Reference_title |
|---|---|
| A Chromosome-Level Genome Assembly of Dendrobium Huoshanense Using Long Reads and Hi-C Data. |
| Database_name | CNSA |
|---|
Dendrobium_hybrid_cultivar
| References | Reference_title |
|---|---|
| First De novo whole genome sequencing and assembly of mutant Dendrobium hybrid cultivar Emma White. |
| Database_name | GigaDB |
|---|
Dendrobium_nobile
| References | Reference_title |
|---|---|
| Chromosome-Level Genome Assembly for Acer pseudosieboldianum and Highlights to Mechanisms for Leaf Color and Shape Change |
| Database_name | NCBI |
|---|
Gastrodia_elata
| References | Reference_title |
|---|---|
| A chromosome-scale Gastrodia elata genome and large-scale comparative genomic analysis indicate convergent evolution by gene loss in mycoheterotrophic and parasitic plants. |
| Database_name | NGDC |
|---|
Gastrodia_menghaiensis
| References | Reference_title |
|---|---|
| The Gastrodia menghaiensis (Orchidaceae) genome provides new insights of orchid mycorrhizal interactions |
| Database_name | Figshare |
|---|
Iris_pallida
Papilionanthehookeriana_xteres
| References | Reference_title |
|---|---|
| Genome assembly and chemogenomic profiling of National Flower of Singapore Papilionanthe Miss Joaquim 'agnes' reveals metabolic pathways regulating floral traits |
| Database_name | NA |
|---|
Phalaenopsis_aphrodite
| References | Reference_title |
|---|---|
| Chromosome-level assembly, genetic and physical mapping of Phalaenopsis aphrodite genome provides new insights into species adaptation and resources for orchid breeding |
| Database_name | Phalaenopsis aphrodite Genome Resources |
|---|
Phalaenopsis_equestris
| References | Reference_title |
|---|---|
| The genome sequence of the orchid Phalaenopsis equestris |
| Database_name | NCBI |
|---|
Vanilla_planifolia
| References | Reference_title |
|---|---|
| A phased Vanilla planifolia genome enables genetic improvement of flavour and production |
| Database_name | NCBI |
|---|
Amorphophallus_konjac
| References | Reference_title |
|---|---|
| A chromosome-level genome assembly of Amorphophallus konjac provides insights into konjac glucomannan biosynthesis |
| Database_name | Figshare |
|---|
Colocasia_esculenta
| References | Reference_title |
|---|---|
| A high-quality genome of taro (Colocasia esculenta (L.) Schott), one of the world's oldest crops |
| Database_name | CNDB |
|---|
Lemna_minor
| References | Reference_title |
|---|---|
| The first draft genome of the aquatic model plant Lemna minor opens the route for future stress physiology research and biotechnological applications |
| Database_name | CoGe |
|---|
Lemna_minuta
| References | Reference_title |
|---|---|
| The genome and preliminary single-nuclei transcriptome of Lemna minuta reveals mechanisms of invasiveness |
| Database_name | CoGe |
|---|
Pinellia_pedatisecta
| References | Reference_title |
|---|---|
| The high-quality Pinellia pedatisecta genome reveals a key role of tandem duplication in the expansion of its agglutinin genes. |
| Database_name | CNSA |
|---|
Pistia_stratiotes
| References | Reference_title |
|---|---|
| The chromosome-level genome of a free-floating aquatic weed Pistia stratiotes provides insights into its rapid invasion. |
| Database_name | CNSA |
|---|
Spirodela_intermedia
| References | Reference_title |
|---|---|
| Chromosome-scale genome assembly for the duckweed Spirodela intermedia, integrating cytogenetic maps, PacBio and Oxford Nanopore libraries |
| Database_name | NCBI |
|---|
Spirodela_polyrhiza
| References | Reference_title |
|---|---|
| Plant evolution and environmental adaptation unveiled by long-read whole-genome sequencing of Spirodela |
| Database_name | Phytozome |
|---|
Wolffia_australiana
| References | Reference_title |
|---|---|
| Genome of the world's smallest flowering plant, Wolffia australiana, helps explain its specialized physiology and unique morphology. |
| Database_name | Selfdb |
|---|
Zantedeschia_elliottiana
| References | Reference_title |
|---|---|
| Chromosome level genome assembly of colored calla lily (Zantedeschia elliottiana) |
| Database_name | Figshare |
|---|
Zostera_marina
| References | Reference_title |
|---|---|
| The genome of the seagrass Zostera marina reveals angiosperm adaptation to the sea |
| Database_name | Phytozome |
|---|
Areca_catechu
| References | Reference_title |
|---|---|
| Chromosome-scale genome assembly of areca palm (Areca catechu) |
| Database_name | CNSA |
|---|
Calamus_simplicifolius
| References | Reference_title |
|---|---|
| The chromosome-level genome assemblies of two rattans (Calamus simplicifolius and Daemonorops jenkinsiana) |
| Database_name | GigaDB |
|---|
Daemonorops_jenkinsiana
| References | Reference_title |
|---|---|
| The chromosome-level genome assemblies of two rattans (Calamus simplicifolius and Daemonorops jenkinsiana) |
| Database_name | GigaDB |
|---|
Elaeis_guineensis
| References | Reference_title |
|---|---|
| Oil palm genome sequence reveals divergence of interfertile species in Old and New worlds |
| Database_name | NCBI |
|---|
Phoenix_dactylifera
| References | Reference_title |
|---|---|
| Genome-wide association mapping of date palm fruit traits |
| Database_name | NCBI |
|---|
Cenchrus_macrourus
| References | Reference_title |
|---|---|
| A near-complete genome assembly of the allotetrapolyploid Cenchrus fungigraminus (JUJUNCAO) provides insights into its evolution and C4 photosynthesis. |
| Database_name | NGDC |
|---|
Ensete_glaucum
| References | Reference_title |
|---|---|
| A chromosome-level reference genome of Ensete glaucum gives insight into diversity and chromosomal and repetitive sequence evolution in the Musaceae |
| Database_name | Banana genome hub |
|---|
Ensete_ventricosum
| References | Reference_title |
|---|---|
| A Draft Genome Sequence for Ensete ventricosum, the Drought-Tolerant 'Tree Against Hunger' |
| Database_name | NCBI |
|---|
Lanxangia_tsao-ko
| References | Reference_title |
|---|---|
| Chromosome-level genome assembly of Amomum tsao-ko provides insights into the biosynthesis of flavor compounds. |
| Database_name | CNSA |
|---|
Musa_acuminata
| References | Reference_title |
|---|---|
| The banana (Musa acuminata) genome and the evolution of monocotyledonous plants |
| Database_name | Phytozome |
|---|
Musa_balbisiana
| References | Reference_title |
|---|---|
| Musa balbisiana?genome reveals subgenome evolution and functional divergence |
| Database_name | NCBI |
|---|
Musa_beccarii
| References | Reference_title |
|---|---|
| Genome assembly of Musa beccarii shows extensive chromosomal rearrangements and genome expansion during evolution of Musaceae genomes. |
| Database_name | Selfdb |
|---|
Musa_itinerans
| References | Reference_title |
|---|---|
| Whole genome sequencing of a banana wild relative Musa itinerans provides insights into lineage-specific diversification of the Musa genus |
| Database_name | Banana genome hub |
|---|
Musa_schizocarpa
| References | Reference_title |
|---|---|
| Chromosome-scale assemblies of plant genomes using nanopore long reads and optical maps |
| Database_name | genoscope |
|---|
Musa_textilis
| References | Reference_title |
|---|---|
| Sequencing and de Novo Assembly of Abaca (Musa textilis Nee) var. Abuab Genome |
| Database_name | Selfdb |
|---|
Musa_troglodytarum
| References | Reference_title |
|---|---|
| The Musa troglodytarum L. genome provides insights into the mechanism of non-climacteric behaviour and enrichment of carotenoids. |
| Database_name | Selfdb |
|---|
Wurfbainia_longiligularis
| References | Reference_title |
|---|---|
| Comparing genomes of Fructus Amomi-producing species reveals genetic basis of volatile terpenoid divergence. |
| Database_name | Figshare |
|---|
Wurfbainia_villosa
| References | Reference_title |
|---|---|
| Chromosome-level genome assembly and functional characterization of terpene synthases provide insights into the volatile terpenoid biosynthesis of Wurfbainia villosa |
| Database_name | Figshare |
|---|
Zingiber_officinale
| References | Reference_title |
|---|---|
| Haplotype-resolved genome of diploid ginger (Zingiber officinale) and its unique gingerol biosynthetic pathway |
| Database_name | NCBI |
|---|
Cremastra_appendiculata
| References | Reference_title |
|---|---|
| A draft genome of the medicinal plant Cremastra appendiculata (D. Don) provides insights into the colchicine biosynthetic pathway |
| Database_name | CNGB |
|---|
Dioscorea_alata
| References | Reference_title |
|---|---|
| Chromosome evolution and the genetic basis of agronomically important traits in greater yam |
| Database_name | Phytozome |
|---|
Dioscorea_dumetorum
| References | Reference_title |
|---|---|
| High Contiguity de novo Genome Sequence Assembly of Trifoliate Yam (Dioscorea dumetorum) Using Long Read Sequencing |
| Database_name | Universit盲t Bielefeld |
|---|
Dioscorea_rotundata
| References | Reference_title |
|---|---|
| Genome sequencing of the staple food crop white Guinea yam enables the development of a molecular marker for sex determination |
| Database_name | NCBI |
|---|
Dioscorea_zingiberensis
| References | Reference_title |
|---|---|
| The genome of Dioscorea zingiberensis sheds light on the biosynthesis, origin and evolution of the medicinally important diosgenin saponins. |
| Database_name | NCBI |
|---|
Trichopus_zeylanicus
| References | Reference_title |
|---|---|
| High Quality Draft Genome of Arogyapacha (Trichopus zeylanicus), an Important Medicinal Plant Endemic to Western Ghats of India |
| Database_name | CoGe |
|---|
Abrus_precatorius
| References | Reference_title |
|---|---|
| Detection of Abrin-Like and Prepropulchellin-Like Toxin Genes and Transcripts Using Whole Genome Sequencing and Full-Length Transcript Sequencing of Abrus precatorius |
| Database_name | NCBI |
|---|
Acacia_pycnantha
| References | Reference_title |
|---|---|
| A genome resource for Acacia, Australia's largest plant genus. |
| Database_name | NCBI |
|---|
Aeschynomene_evenia
| References | Reference_title |
|---|---|
| Genetics of nodulation in Aeschynomene evenia uncovers mechanisms of the rhizobium-legume symbiosis. |
| Database_name | AeschynomeneBase |
|---|
Ammopiptanthus_nanus
| References | Reference_title |
|---|---|
| Long-read sequencing and de novo genome assembly of Ammopiptanthus nanus, a desert shrub. |
| Database_name | GigaScience GigaDB |
|---|
Amphicarpaea_edgeworthii
| References | Reference_title |
|---|---|
| Chromosome-Scale Reference Genome of Amphicarpaea edgeworthii: A New Resource for Amphicarpic Plants Research and Complex Flowering Pattern. |
| Database_name | figshare |
|---|
Arachis_duranensis
| References | Reference_title |
|---|---|
| Draft genome of the peanut A-genome progenitor (Arachis duranensis) provides insights into geocarpy, oil biosynthesis, and allergens |
| Database_name | NCBI |
|---|
Arachis_hypogaea
| References | Reference_title |
|---|---|
| The genome sequence of segmental allotetraploid peanut Arachis hypogaea |
| Database_name | peanutbase |
|---|
Arachis_ipaensis
| References | Reference_title |
|---|---|
| Genome Sequencing and Analysis of the Peanut B-Genome Progenitor (Arachis ipaensis) |
| Database_name | NCBI |
|---|
Arachis_monticola
| References | Reference_title |
|---|---|
| Genome of an allotetraploid wild peanut Arachis monticola: a de novo assembly. |
| Database_name | GigaScience GigaDB |
|---|
Bauhinia_variegata
| References | Reference_title |
|---|---|
| Chromosomal-level genome assembly of the orchid tree Bauhinia variegata (Leguminosae, Cercidoideae) supports the allotetraploid origin hypothesis of Bauhinia. |
| Database_name | NCBI |
|---|
Cajanus_cajan
| References | Reference_title |
|---|---|
| Refinement of Draft Genome Assemblies of Pigeonpea (Cajanus cajan) |
| Database_name | NCBI |
|---|
Cercis_canadensis
| References | Reference_title |
|---|---|
| Phylogenomics reveals multiple losses of nitrogen-fixing root nodule symbiosis. |
| Database_name | GigaDB |
|---|
Chamaecrista_fasciculata
| References | Reference_title |
|---|---|
| Phylogenomics reveals multiple losses of nitrogen-fixing root nodule symbiosis. |
| Database_name | GigaDB |
|---|
Cicer_arietinum
| References | Reference_title |
|---|---|
| An advanced draft genome assembly of a desi type chickpea (Cicer arietinum L.) |
| Database_name | Phytozome |
|---|
Cicer_reticulatum
| References | Reference_title |
|---|---|
| Draft genome sequence of Cicer reticulatum L., the wild progenitor of chickpea provides a resource for agronomic trait improvement |
| Database_name | selfdb |
|---|
Dalbergia_cochinchinensis
| References | Reference_title |
|---|---|
| Chromosome-scale genomes of five Hongmu species in Leguminosae. |
| Database_name | figshare |
|---|
Dalbergia_cultrata
| References | Reference_title |
|---|---|
| Chromosome-scale genomes of five Hongmu species in Leguminosae. |
| Database_name | figshare |
|---|
Dalbergia_odorifera
| References | Reference_title |
|---|---|
| The chromosome-level draft genome of Dalbergia odorifera |
| Database_name | GigaDB |
|---|
Entada_phaseoloides
| References | Reference_title |
|---|---|
| Chromosome-level genome of Entada phaseoloides provides insights into genome evolution and triterpenoid saponins biosynthesis. |
| Database_name | CNGB |
|---|
Faidherbia_albida
| References | Reference_title |
|---|---|
| The draft genomes of five agriculturally important African orphan crops |
| Database_name | Bioinformatics & Systems Biology |
|---|
Glycine_max
| References | Reference_title |
|---|---|
| Genome assembly of the popular Korean soybean cultivar Hwangkeum |
| Database_name | JGI |
|---|
Glycine_soja
Lablab_purpureus
| References | Reference_title |
|---|---|
| The draft genomes of five agriculturally important African orphan crops |
| Database_name | Bioinformatics & Systems Biology |
|---|
Lactuca_sativa
| Database_name | selfdb |
|---|
Lotus_japonicus
| References | Reference_title |
|---|---|
| Insights into the evolution of symbiosis gene copy number and distribution from a chromosome-scale Lotus japonicus Gifu genome sequence. |
| Database_name | CoGe |
|---|
Lupinus_albus
| References | Reference_title |
|---|---|
| High-quality genome sequence of white lupin provides insight into soil exploration and seed quality |
| Database_name | SelfDB |
|---|
Lupinus_angustifolius
| References | Reference_title |
|---|---|
| Whole-genome assembly and resequencing reveal genomic imprint and key genes of rapid domestication in narrow-leafed lupin |
| Database_name | NCBI |
|---|
Medicago_polymorpha
| References | Reference_title |
|---|---|
| The genome of Medicago polymorpha provides insights into its edibility and nutritional value as a vegetable and forage legume |
| Database_name | NGDC |
|---|
Medicago_ruthenica
| References | Reference_title |
|---|---|
| The genome of a wild Medicago species provides insights into the tolerant mechanisms of legume forage to environmental stress. |
| Database_name | figshare |
|---|
Medicago_truncatula
| References | Reference_title |
|---|---|
| An improved genome release (version Mt4.0) for the model legume Medicago truncatula |
| Database_name | Phytozome |
|---|
Melilotus_albus
| References | Reference_title |
|---|---|
| Genome and systems biology of Melilotus albus provides insights into coumarins biosynthesis. |
| Database_name | CNGB |
|---|
Mimosa_pudica
| References | Reference_title |
|---|---|
| Phylogenomics reveals multiple losses of nitrogen-fixing root nodule symbiosis. |
| Database_name | GigaDB |
|---|
Mucuna_pruriens
| References | Reference_title |
|---|---|
| Chromosomal-level genome of velvet bean (Mucuna pruriens) provides resources for L-DOPA synthetic research and development. |
| Database_name | CNGBdb |
|---|
Nissolia_schottii
| References | Reference_title |
|---|---|
| Phylogenomics reveals multiple losses of nitrogen-fixing root nodule symbiosis. |
| Database_name | GigaDB |
|---|
Phaseolus_acutifolius
| References | Reference_title |
|---|---|
| The tepary bean genome provides insight into evolution and domestication under heat stress |
| Database_name | JGI |
|---|
Phaseolus_lunatus
| References | Reference_title |
|---|---|
| Comprehensive genomic resources related to domestication and crop improvement traits in Lima bean |
| Database_name | JGI |
|---|
Phaseolus_vulgaris
| References | Reference_title |
|---|---|
| Genome and transcriptome analysis of the Mesoamerican common bean and the role of gene duplications in establishing tissue and temporal specialization of genes |
| Database_name | NCBI |
|---|
Pisum_sativum
| References | Reference_title |
|---|---|
| A reference genome for pea provides insight into legume genome evolution |
| Database_name | plant and fungi data integration |
|---|
Polygala_tenuifolia
| References | Reference_title |
|---|---|
| Genome Assembly of Polygala tenuifolia Provides Insights into Its Karyotype Evolution and Triterpenoid Saponin Biosynthesis. |
| Database_name | TCMPG |
|---|
Prosopis_alba
| References | Reference_title |
|---|---|
| Genome and evolution of Prosopis alba Griseb. a drought and salinity tolerant tree legume crop for arid climates. |
| Database_name | NCBI |
|---|
Prosopis_cineraria
| References | Reference_title |
|---|---|
| The Genome of the Mimosoid Legume Prosopis cineraria, a Desert Tree. |
| Database_name | NCBI |
|---|
Pterocarpus_macrocarpus
| References | Reference_title |
|---|---|
| Chromosome-scale genomes of five Hongmu species in Leguminosae. |
| Database_name | figshare |
|---|
Pterocarpus_santalinus
| References | Reference_title |
|---|---|
| Chromosome-scale genomes of five Hongmu species in Leguminosae. |
| Database_name | figshare |
|---|
Robinia_pseudoacacia
| References | Reference_title |
|---|---|
| Chromosome-level genome assembly and population genomics of Robinia pseudoacacia reveal the genetic basis for its wide cultivation. |
| Database_name | figshare |
|---|
Senna_siamea
| References | Reference_title |
|---|---|
| Chromosome-scale genomes of five Hongmu species in Leguminosae. |
| Database_name | figshare |
|---|
Senna_tora
| References | Reference_title |
|---|---|
| Genome-enabled discovery of anthraquinone biosynthesis in Senna tora |
| Database_name | NCBI |
|---|
Spatholobus_suberectus
Trifolium_pratense
| References | Reference_title |
|---|---|
| Chromosome-scale assembly of the highly heterozygous genome of red clover (Trifolium pratense L.), an allogamous forage crop species. |
| Database_name | NCBI |
|---|
Trifolium_repens
| References | Reference_title |
|---|---|
| Haplotype-resolved, chromosome-level assembly of white clover (Trifolium repens L., Fabaceae). |
| Database_name | NCBI |
|---|
Trifolium_subterranum
| References | Reference_title |
|---|---|
| Draft genome sequence of subterranean clover, a reference for genus Trifolium |
| Database_name | NCBI |
|---|
Vicia_faba
| References | Reference_title |
|---|---|
| The giant diploid faba genome unlocks variation in a global protein crop |
| Database_name | SelfDB |
|---|
Vicia_sativa
| References | Reference_title |
|---|---|
| Chromosome-level assembly of the common vetch (Vicia sativa) reference genome. |
| Database_name | GigaDB |
|---|
Vigna_angularis
Vigna_hirtella
| Database_name | GigaScience GigaDB |
|---|
Vigna_radiata
| References | Reference_title |
|---|---|
| Genome sequence of mungbean and insights into evolution within Vigna species |
| Database_name | NCBI |
|---|
Vigna_subterranea
| References | Reference_title |
|---|---|
| The draft genomes of five agriculturally important African orphan crops |
| Database_name | Bioinformatics & Systems Biology |
|---|
Vigna_umbellata
| Database_name | NCBI |
|---|
Vigna_unguiculata
| References | Reference_title |
|---|---|
| The genome assembly of asparagus bean, Vigna unguiculata ssp. sesquipedialis |
| Database_name | Phytozome |
|---|
Acer_catalpifolium
| References | Reference_title |
|---|---|
| Whole-Genome Sequencing of Acer catalpifolium Reveals Evolutionary History of Endangered Species |
| Database_name | NGDC |
|---|
Acer_negundo
| References | Reference_title |
|---|---|
| Strategies of tolerance reflected in two North American maple genomes. |
| Database_name | NCBI |
|---|
Acer_pseudosieboldianum
| References | Reference_title |
|---|---|
| Chromosome-Level Genome Assembly for Acer pseudosieboldianum and Highlights to Mechanisms for Leaf Color and Shape Change |
| Database_name | NGDC |
|---|
Acer_yangbiense
| References | Reference_title |
|---|---|
| De novo genome assembly of the endangered Acer yangbiense, a plant species with extremely small populations endemic to Yunnan Province, China. |
| Database_name | GigaDB |
|---|
Aegle_marmelos
| References | Reference_title |
|---|---|
| Pangenome analysis provides insight into the evolution of the orange subfamily and a key gene for citric acid accumulation in citrus fruits. |
| Database_name | CPBD |
|---|
Aesculus_chinensis
| References | Reference_title |
|---|---|
| Characterization of the horse chestnut genome reveals the evolution of aescin and aesculin biosynthesis. |
| Database_name | figshare |
|---|
Atalantia_buxifolia
| References | Reference_title |
|---|---|
| Pangenome analysis provides insight into the evolution of the orange subfamily and a key gene for citric acid accumulation in citrus fruits. |
| Database_name | CPBD |
|---|
Citropsis_gilletiana
| References | Reference_title |
|---|---|
| Pangenome analysis provides insight into the evolution of the orange subfamily and a key gene for citric acid accumulation in citrus fruits. |
| Database_name | CPBD |
|---|
Citrus_australasica
| References | Reference_title |
|---|---|
| Pangenome analysis provides insight into the evolution of the orange subfamily and a key gene for citric acid accumulation in citrus fruits. |
| Database_name | CPBD |
|---|
Citrus_australis
| References | Reference_title |
|---|---|
| Haplotype resolved chromosome level genome assembly of Citrus australis reveals disease resistance and other citrus specific genes. |
| Database_name | Citrus genome database |
|---|
Citrus_cavaleriei
| References | Reference_title |
|---|---|
| Pangenome analysis provides insight into the evolution of the orange subfamily and a key gene for citric acid accumulation in citrus fruits. |
| Database_name | CPBD |
|---|
Citrus_clementina
| References | Reference_title |
|---|---|
| Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication |
| Database_name | NCBI |
|---|
Citrus_grandis
| References | Reference_title |
|---|---|
| Genomic analyses of primitive, wild and cultivated citrus provide insights into asexual reproduction |
| Database_name | Citrus sinensis Annotation project |
|---|
Citrus_japonica
| References | Reference_title |
|---|---|
| Genome sequencing and CRISPR/Cas9 gene editing of an early flowering Mini-Citrus (Fortunella hindsii). |
| Database_name | CPBD |
|---|
Citrus_linwuensis
| References | Reference_title |
|---|---|
| Pangenome analysis provides insight into the evolution of the orange subfamily and a key gene for citric acid accumulation in citrus fruits. |
| Database_name | CPBD |
|---|
Citrus_mangshanensis
| References | Reference_title |
|---|---|
| Pangenome analysis provides insight into the evolution of the orange subfamily and a key gene for citric acid accumulation in citrus fruits. |
| Database_name | CPBD |
|---|
Citrus_medica
| References | Reference_title |
|---|---|
| Genomic analyses of primitive, wild and cultivated citrus provide insights into asexual reproduction |
| Database_name | CPBD |
|---|
Citrus_reticulata
| References | Reference_title |
|---|---|
| Genome of wild mandarin and domestication history of mandarin |
| Database_name | CPBD |
|---|
Citrus_sinensis
| References | Reference_title |
|---|---|
| The draft genome of sweet orange (Citrus sinensis) |
| Database_name | Phytozome |
|---|
Citrus_trifoliata
| References | Reference_title |
|---|---|
| A Chromosome-scale Reference Genome of Trifoliate Orange (Poncirus trifoliata) Provides Insights into Disease Resistance, Cold Tolerance and Genome Evolution in Citrus. |
| Database_name | CPBD |
|---|
Citrus_x_limon
| References | Reference_title |
|---|---|
| A gap-free and haplotype-resolved lemon genome provides insights into flavor synthesis and Huanglongbing (HLB) tolerance. |
| Database_name | NGDC |
|---|
Clausena_lansium
| References | Reference_title |
|---|---|
| Pangenome analysis provides insight into the evolution of the orange subfamily and a key gene for citric acid accumulation in citrus fruits. |
| Database_name | CPBD |
|---|
Dimocarpus_longan
| References | Reference_title |
|---|---|
| Genomic insights into longan evolution from a chromosome-level genome assembly and population genomics of longan accessions. |
| Database_name | NGDC |
|---|
Dipteronia_dyeriana
| References | Reference_title |
|---|---|
| Genome sequences and population genomics provide insights into the demographic history, inbreeding, and mutation load of two living fossil tree species of Dipteronia. |
| Database_name | CNGBdb |
|---|
Dipteronia_sinensis
| References | Reference_title |
|---|---|
| Genome sequences and population genomics provide insights into the demographic history, inbreeding, and mutation load of two living fossil tree species of Dipteronia. |
| Database_name | CNGBdb |
|---|
Litchi_chinensis
| References | Reference_title |
|---|---|
| Two divergent haplotypes from a highly heterozygous lychee genome suggest independent domestication events for early and late-maturing cultivars |
| Database_name | Mendeley |
|---|
Luvunga_scandens
| References | Reference_title |
|---|---|
| Pangenome analysis provides insight into the evolution of the orange subfamily and a key gene for citric acid accumulation in citrus fruits. |
| Database_name | CPBD |
|---|
Murraya_paniculata
| References | Reference_title |
|---|---|
| Pangenome analysis provides insight into the evolution of the orange subfamily and a key gene for citric acid accumulation in citrus fruits. |
| Database_name | CPBD |
|---|
Nephelium_lappaceum
| References | Reference_title |
|---|---|
| The chromosome-level rambutan genome reveals a significant role of segmental duplication in the expansion of resistance genes |
| Database_name | Nia |
|---|
Sapindus_mukorossi
| References | Reference_title |
|---|---|
| Chromosome-scale assembly and population diversity analyses provide insights into the evolution of Sapindus mukorossi |
| Database_name | NGDC |
|---|
Sclerocarya_birrea
| References | Reference_title |
|---|---|
| The draft genomes of five agriculturally important African orphan crops |
| Database_name | GigaDB |
|---|
Toona_sinensis
| References | Reference_title |
|---|---|
| Long read sequencing of Toona sinensis (A. Juss) Roem: a chromosome-level reference genome for the Meliaceae family. |
| Database_name | CNSA |
|---|
Xanthoceras_sorbifolium
| References | Reference_title |
|---|---|
| The genome assembly and annotation of yellowhorn(Xanthoceras sorbifoliumBunge) |
| Database_name | GigaDB |
|---|
Zanthoxylum_armatum
| References | Reference_title |
|---|---|
| Chromosome-level assembly of triploid genome of Sichuan pepper (Zanthoxylum armatum) |
| Database_name | Figshare |
|---|
Actinidia_chinensis
Actinidia_hemsleyana
| References | Reference_title |
|---|---|
| Genomic analyses reveal dead-end hybridization between two deeply divergent kiwifruit species rather than homoploid hybrid speciation. |
| Database_name | NGDC |
|---|
Actinidia_zhejiangensis
| References | Reference_title |
|---|---|
| Genomic analyses reveal dead-end hybridization between two deeply divergent kiwifruit species rather than homoploid hybrid speciation. |
| Database_name | NGDC |
|---|
Aegiceras_corniculatum
| References | Reference_title |
|---|---|
| Chromosome-level assembly of the mangrove plant Aegiceras corniculatum genome generated through Illumina, PacBio and Hi-C sequencing technologies |
| Database_name | CNGB |
|---|
Camellia_chekiangoleosa
| References | Reference_title |
|---|---|
| The reference genome of Camellia chekiangoleosa provides insights into Camellia evolution and tea oil biosynthesis. |
| Database_name | NGDC |
|---|
Camellia_oleifera
| References | Reference_title |
|---|---|
| The genome of oil-Camellia and population genomics analysis provide insights into seed oil domestication |
| Database_name | Zenodo |
|---|
Camellia_sinensis
| References | Reference_title |
|---|---|
| Population sequencing enhances understanding of tea plant evolution |
| Database_name | NCBI |
|---|
Clethra_arborea
| References | Reference_title |
|---|---|
| Annotated genome sequences of the carnivorous plant Roridula gorgonias and a non-carnivorous relative, Clethra arborea |
| Database_name | Dryad |
|---|
Diospyros_lotus
| References | Reference_title |
|---|---|
| The persimmon genome reveals clues to the evolution of a lineage-specific sex determination system in plants |
| Database_name | Bioinformatics & Systems Biology |
|---|
Diospyros_oleifera
| References | Reference_title |
|---|---|
| A high-quality chromosomal genome assembly of Diospyros oleifera Cheng. |
| Database_name | GigaDB |
|---|
Gilia_yorkii
| References | Reference_title |
|---|---|
| Chromosome-Scale Genome Assembly of Gilia yorkii Enables Genetic Mapping of Floral Traits in an Interspecies Cross |
| Database_name | CoGe |
|---|
Primula_veris
| References | Reference_title |
|---|---|
| The draft genome of Primula veris yields insights into the molecular basis of heterostyly |
| Database_name | Dryad |
|---|
Rhododendron_delavayi
| References | Reference_title |
|---|---|
| The draft genome assembly of Rhododendron delavayi Franch. var. delavayi |
| Database_name | GigaDB |
|---|
Rhododendron_griersonianum
| References | Reference_title |
|---|---|
| Chromosome-level genome assembly and population genetic analysis of a critically endangered rhododendron provide insights into its conservation |
| Database_name | NCBI |
|---|
Rhododendron_henanense
| References | Reference_title |
|---|---|
| The chromosome-scale genome assembly, annotation and evolution of Rhododendron henanense subsp. Lingbaoense |
| Database_name | Genome warehouse |
|---|
Rhododendron_molle
| References | Reference_title |
|---|---|
| Gapless genome assembly of azalea and multi-omics investigation into divergence between two species with distinct flower color |
| Database_name | NGDC |
|---|
Rhododendron_ovatum
| References | Reference_title |
|---|---|
| High-quality evergreen azalea genome reveals tandem duplication-facilitated low-altitude adaptability and floral scent evolution |
| Database_name | RPGD |
|---|
Rhododendron_prattii
| References | Reference_title |
|---|---|
| Pervasive hybridization during evolutionary radiation of Rhododendron subgenus Hymenanthes in mountains of southwest China |
| Database_name | NGDC |
|---|
Rhododendron_ripense
| References | Reference_title |
|---|---|
| Whole-genome sequencing and analysis of two azaleas, Rhododendron ripense and Rhododendron kiyosumense |
| Database_name | Plantgarden |
|---|
Rhododendron_simsii
| References | Reference_title |
|---|---|
| The Rhododendron Genome and Chromosomal Organization Provide Insight into Shared Whole-Genome Duplications across the Heath Family (Ericaceae) |
| Database_name | NCBI |
|---|
Rhododendron_vialii
| References | Reference_title |
|---|---|
| A haplotype-resolved genome assembly of Rhododendron vialii based on PacBio HiFi reads and Hi-C data. |
| Database_name | NGDC |
|---|
Rhododendron_williamsianum
| References | Reference_title |
|---|---|
| The Rhododendron Genome and Chromosomal Organization Provide Insight into Shared Whole-Genome Duplications across the Heath Family |
| Database_name | NCBI |
|---|
Roridula_gorgonias
| References | Reference_title |
|---|---|
| Annotated genome sequences of the carnivorous plant Roridula gorgonias and a non-carnivorous relative, Clethra arborea |
| Database_name | Dryad |
|---|
Synsepalum_dulcificum
| References | Reference_title |
|---|---|
| The Chromosome-Level Genome of Miracle Fruit (Synsepalum dulcificum) Provides New Insights Into the Evolution and Function of Miraculin |
| Database_name | CNGB |
|---|
Vaccinium_caesariense
| References | Reference_title |
|---|---|
| Autopolyploid inheritance and a heterozygous reciprocal translocation shape chromosome genetic behavior in tetraploid blueberry (Vaccinium corymbosum) |
| Database_name | GDV |
|---|
Vaccinium_corymbosum
| References | Reference_title |
|---|---|
| Haplotype-phased genome and evolution of phytonutrient pathways of tetraploid blueberry |
| Database_name | Coge |
|---|
Vaccinium_darrowii
| References | Reference_title |
|---|---|
| High-quality reference genome and annotation aids understanding of berry development for evergreen blueberry (Vaccinium darrowii) |
| Database_name | GDV |
|---|
Vaccinium_duclouxii
| References | Reference_title |
|---|---|
| The Telomere-to-telomere gap-free reference genome of wild blueberry (Vaccinium duclouxii) provides its high soluble sugar and anthocyanin accumulation. |
| Database_name | NGDC |
|---|
Vaccinium_macrocarpon
| References | Reference_title |
|---|---|
| Contrasting a reference cranberry genome to a crop wild relative provides insights into adaptation, domestication, and breeding. |
| Database_name | GDV |
|---|
Vaccinium_microcarpum
| References | Reference_title |
|---|---|
| Chromosome-Level Genome Assembly of the American Cranberry ( Vaccinium macrocarpon Ait.) and Its Wild Relative Vaccinium microcarpum |
| Database_name | GDV |
|---|
Vaccinium_myrtillus
| References | Reference_title |
|---|---|
| A chromosome-scale assembly of the bilberry genome identifies a complex locus controlling berry anthocyanin composition |
| Database_name | GDV |
|---|
Vaccinium_oxycoccos
| References | Reference_title |
|---|---|
| Contrasting a reference cranberry genome to a crop wild relative provides insights into adaptation, domestication, and breeding. |
| Database_name | GDV |
|---|
Vitellaria_paradoxa
| References | Reference_title |
|---|---|
| Genomic Resources to Guide Improvement of the Shea Tree |
| Database_name | ORCAE |
|---|
Aethionema_arabicum
| References | Reference_title |
|---|---|
| Genome Improvement and Genetic Map Construction for Aethionema arabicum, the First Divergent Branch in the Brassicaceae Family |
| Database_name | CoGe |
|---|
Arabidopsis_halleri
| References | Reference_title |
|---|---|
| Genomic signatures of convergent adaptation to Alpine environments in three Brassicaceae species |
| Database_name | BRAD |
|---|
Arabidopsis_lyrata
| References | Reference_title |
|---|---|
| Genome-wide quantification of homeolog expression ratio revealed nonstochastic gene regulation in synthetic allopolyploid Arabidopsis |
| Database_name | Phytozome |
|---|
Arabidopsis_suecica
| References | Reference_title |
|---|---|
| Concerted genomic and epigenomic changes accompany stabilization of Arabidopsis allopolyploids. |
| Database_name | NCBI |
|---|
Arabidopsis_thaliana
| References | Reference_title |
|---|---|
| High contiguity Arabidopsis thaliana genome assembly with a single nanopore flow cell |
| Database_name | Phytozome |
|---|
Arabis_alpina
| References | Reference_title |
|---|---|
| Genomic signatures of convergent adaptation to Alpine environments in three Brassicaceae species |
| Database_name | BRAD |
|---|
Arabis_nemorensis
| References | Reference_title |
|---|---|
| Strengths and potential pitfalls of hay transfer for ecological restoration revealed by RAD-seq analysis in floodplain Arabis species |
| Database_name | NCBI |
|---|
Armoracia_rusticana
| References | Reference_title |
|---|---|
| The allotetraploid horseradish genome provides insights into subgenome diversification and formation of critical traits |
| Database_name | figshare |
|---|
Barbarea_vulgaris
| References | Reference_title |
|---|---|
| The genome sequence of Barbarea vulgaris facilitates the study of ecological biochemistry |
| Database_name | Barbarea vulgaris Genome Database |
|---|
Boechera_retrofracta
| References | Reference_title |
|---|---|
| Assembly of the Boechera retrofracta Genome and Evolutionary Analysis of Apomixis-Associated Genes |
| Database_name | BRAD |
|---|
Boechera_stricta
| References | Reference_title |
|---|---|
| Young inversion with multiple linked QTLs under selection in a hybrid zone |
| Database_name | Phytozome |
|---|
Brassica_carinata
| References | Reference_title |
|---|---|
| Brassica carinata genome characterization clarifies U triangle model of evolution and polyploidy in Brassica |
| Database_name | NCBI |
|---|
Brassica_gravinae
| References | Reference_title |
|---|---|
| A genomic panel for studying C3-C4 intermediate photosynthesis in the Brassiceae tribe. |
| Database_name | figshare |
|---|
Brassica_juncea
| References | Reference_title |
|---|---|
| The genome sequence of allopolyploid Brassica juncea and analysis of differential homoeolog gene expression influencing selection |
| Database_name | BRAD |
|---|
Brassica_napus
| References | Reference_title |
|---|---|
| Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome |
| Database_name | BRAD |
|---|
Brassica_nigra
| References | Reference_title |
|---|---|
| A high-contiguity Brassica nigra genome localizes active centromeres and defines the ancestral Brassica genome |
| Database_name | BRAD |
|---|
Brassica_oleracea
| References | Reference_title |
|---|---|
| The Brassica oleracea genome reveals the asymmetrical evolution of polyploid genomes |
| Database_name | BRAD |
|---|
Brassica_rapa
| References | Reference_title |
|---|---|
| The genome of the mesopolyploid crop species Brassica rapa |
| Database_name | BRAD |
|---|
Brassica_repanda
| References | Reference_title |
|---|---|
| A genomic panel for studying C3-C4 intermediate photosynthesis in the Brassiceae tribe. |
| Database_name | figshare |
|---|
Brassica_tournefortii
| References | Reference_title |
|---|---|
| A genomic panel for studying C3-C4 intermediate photosynthesis in the Brassiceae tribe. |
| Database_name | figshare |
|---|
Bretschneidera_sinensis
| References | Reference_title |
|---|---|
| The genome of the Paleogene relic tree Bretschneidera sinensis: insights into trade-offs in gene family evolution, demographic history, and adaptive SNPs |
| Database_name | Figshare |
|---|
Camelina_sativa
| References | Reference_title |
|---|---|
| The emerging biofuel crop Camelina sativa retains a highly undifferentiated hexaploid genome structure |
| Database_name | Ensembl |
|---|
Capparis_spinosa
| References | Reference_title |
|---|---|
| The Capparis spinosa var. herbacea genome provides the first genomic instrument for a diversity and evolution study of the Capparaceae family. |
| Database_name | NGDC |
|---|
Capsella_grandiflora
| References | Reference_title |
|---|---|
| The Capsella rubella genome and the genomic consequences of rapid mating system evolution |
| Database_name | Phytozome |
|---|
Capsella_rubella
| References | Reference_title |
|---|---|
| The Capsella rubella genome and the genomic consequences of rapid mating system evolution |
| Database_name | NCBI |
|---|
Cardamine_enshiensis
| References | Reference_title |
|---|---|
| The Cardamine enshiensis genome reveals whole genome duplication and insight into selenium hyperaccumulation and tolerance |
| Database_name | NGDC |
|---|
Cardamine_hirsuta
| References | Reference_title |
|---|---|
| The Cardamine hirsuta genome offers insight into the evolution of morphological diversity. |
| Database_name | Cardamine hirsuta Genetic and genomic |
|---|
Carica_papaya
| References | Reference_title |
|---|---|
| Resolution of deep angiosperm phylogeny using conserved nuclear genes and estimates of early divergence times |
| Database_name | Phytozome |
|---|
Carrichtera_annua
| References | Reference_title |
|---|---|
| A genomic panel for studying C3-C4 intermediate photosynthesis in the Brassiceae tribe. |
| Database_name | figshare |
|---|
Cleome_gynandra
| References | Reference_title |
|---|---|
| Integrated global analysis in spider flowers illuminates features underlying the evolution and maintenance of C4 photosynthesis. |
| Database_name | NGDC |
|---|
Diplotaxis_acris
| References | Reference_title |
|---|---|
| A genomic panel for studying C3-C4 intermediate photosynthesis in the Brassiceae tribe. |
| Database_name | figshare |
|---|
Diplotaxis_erucoides
| References | Reference_title |
|---|---|
| A genomic panel for studying C3-C4 intermediate photosynthesis in the Brassiceae tribe. |
| Database_name | None |
|---|
Diplotaxis_harra
| References | Reference_title |
|---|---|
| A genomic panel for studying C3-C4 intermediate photosynthesis in the Brassiceae tribe. |
| Database_name | None |
|---|
Diplotaxis_muralis
| References | Reference_title |
|---|---|
| A genomic panel for studying C3-C4 intermediate photosynthesis in the Brassiceae tribe. |
| Database_name | figshare |
|---|
Diplotaxis_tenuifolia
| References | Reference_title |
|---|---|
| A genomic panel for studying C3-C4 intermediate photosynthesis in the Brassiceae tribe. |
| Database_name | figshare |
|---|
Diplotaxis_tenuisiliqua
| References | Reference_title |
|---|---|
| A genomic panel for studying C3-C4 intermediate photosynthesis in the Brassiceae tribe. |
| Database_name | figshare |
|---|
Diplotaxis_viminea
| References | Reference_title |
|---|---|
| A genomic panel for studying C3-C4 intermediate photosynthesis in the Brassiceae tribe. |
| Database_name | figshare |
|---|
Draba_nivalis
| References | Reference_title |
|---|---|
| The genome of Draba nivalis shows signatures of adaptation to the extreme environmental stresses of the Arctic. |
| Database_name | DRYAD |
|---|
Erysimum_cheiranthoides
| References | Reference_title |
|---|---|
| Independent evolution of ancestral and novel defenses in a genus of toxic plants (Erysimum, Brassicaceae). |
| Database_name | Erysimum Database |
|---|
Eutrema_japonicum
| References | Reference_title |
|---|---|
| Haplotype-resolved chromosomal-level assembly of wasabi (Eutrema japonicum) genome. |
| Database_name | figshare |
|---|
Eutrema_salsugineum
| References | Reference_title |
|---|---|
| The reference genome of the halophytic plant Eutrema salsugineum |
| Database_name | Phytozome |
|---|
Heliophila_variabilis
| References | Reference_title |
|---|---|
| The meso-octoploid Heliophila variabilis genome sheds a new light on the impact of polyploidization and diploidization on the diversity of the Cape flora. |
| Database_name | bioinformaticslab |
|---|
Hirschfeldia_incana
| References | Reference_title |
|---|---|
| The genome sequence of Hirschfeldia incana, a new Brassicaceae model to improve photosynthetic light-use efficiency |
| Database_name | Hirschfeldia incana Web Portal |
|---|
Isatis_indigotica
| References | Reference_title |
|---|---|
| A chromosome-scale genome assembly of Isatis indigotica, an important medicinal plant used in traditional Chinese medicine |
| Database_name | Figshare |
|---|
Leavenworthia_alabamica
| References | Reference_title |
|---|---|
| An atlas of over 90,000 conserved noncoding sequences provides insight into crucifer regulatory regions |
| Database_name | UCSC |
|---|
Lepidium_meyenii
| References | Reference_title |
|---|---|
| Genome of Plant Maca (Lepidium meyenii) Illuminates Genomic Basis for High-Altitude Adaptation in the Central Andes |
| Database_name | herbal-genome |
|---|
Lobularia_maritima
| References | Reference_title |
|---|---|
| A chromosome-scale reference genome of Lobularia maritima, an ornamental plant with high stress tolerance. |
| Database_name | NGDC |
|---|
Megacarpaea_delavayi
| References | Reference_title |
|---|---|
| The Genome Sequence of Alpine Megacarpaea delavayi Identifies Species-Specific Whole-Genome Duplication. |
| Database_name | NGDC |
|---|
Megadenia_pygmaea
| References | Reference_title |
|---|---|
| The chromosome-level genome sequence and karyotypic evolution of Megadenia pygmaea (Brassicaceae). |
| Database_name | NGDC |
|---|
Microthlaspi_erraticum
| References | Reference_title |
|---|---|
| The Genome of Microthlaspi erraticum (Brassicaceae) Provides Insights Into the Adaptation to Highly Calcareous Soils |
| Database_name | NCBI |
|---|
Moricandia_nitens
| References | Reference_title |
|---|---|
| A genomic panel for studying C3-C4 intermediate photosynthesis in the Brassiceae tribe. |
| Database_name | None |
|---|
Moricandia_sinaica
| References | Reference_title |
|---|---|
| A genomic panel for studying C3-C4 intermediate photosynthesis in the Brassiceae tribe. |
| Database_name | None |
|---|
Moricandia_spinosa
| References | Reference_title |
|---|---|
| A genomic panel for studying C3-C4 intermediate photosynthesis in the Brassiceae tribe. |
| Database_name | None |
|---|
Moricandia_suffruticosa
| References | Reference_title |
|---|---|
| A genomic panel for studying C3-C4 intermediate photosynthesis in the Brassiceae tribe. |
| Database_name | None |
|---|
Moringa_oleifera
| References | Reference_title |
|---|---|
| The draft genomes of five agriculturally important African orphan crops |
| Database_name | Bioinformatics & Systems Biology |
|---|
Orychophragmus_violaceus
| References | Reference_title |
|---|---|
| The genome of Orychophragmus violaceus provides genomic insights into the evolution of Brassicaceae polyploidization and its distinct traits |
| Database_name | NGDC |
|---|
Raphano_brassica
| References | Reference_title |
|---|---|
| Characterization and acceleration of genome shuffling and ploidy reduction in synthetic allopolyploids by genome sequencing and editing |
| Database_name | NGDC |
|---|
Raphanus_sativus
| References | Reference_title |
|---|---|
| Genome sequence and analysis of a Japanese radish (Raphanus sativus) cultivar named 'Sakurajima Daikon' possessing giant root |
| Database_name | NCBI |
|---|
Rhamphospermum_arvense
| References | Reference_title |
|---|---|
| Sinapis genomes provide insights into whole-genome triplication and divergence patterns within tribe Brassiceae |
| Database_name | Figshare |
|---|
Schrenkiella_parvula
| References | Reference_title |
|---|---|
| The genome of the extremophile crucifer Thellungiella parvula |
| Database_name | BRAD |
|---|
Sinapis_alba
| References | Reference_title |
|---|---|
| Sinapis genomes provide insights into whole-genome triplication and divergence patterns within tribe Brassiceae |
| Database_name | Figshare |
|---|
Sisymbrium_irio
| References | Reference_title |
|---|---|
| An atlas of over 90,000 conserved noncoding sequences provides insight into crucifer regulatory regions |
| Database_name | UCSC |
|---|
Tarenaya_hassleriana
| References | Reference_title |
|---|---|
| The Tarenaya hassleriana Genome Provides Insight into Reproductive Trait and Genome Evolution of Crucifers |
| Database_name | NCBI |
|---|
Thlaspi_arvense
| References | Reference_title |
|---|---|
| Genomic analysis of field pennycress (Thlaspi arvense) provides insights into mechanisms of adaptation to high elevation |
| Database_name | JGI |
|---|
Zostera_muelleri
| References | Reference_title |
|---|---|
| The Genome of a Southern Hemisphere Seagrass Species (Zostera muelleri) |
| Database_name | applied bioinformatics group |
|---|
Agastache_rugosa
| References | Reference_title |
|---|---|
| A chromosome-level genome assembly of Korean mint (Agastache rugosa). |
| Database_name | figshare |
|---|
Andrographis_paniculata
| References | Reference_title |
|---|---|
| Chromosome Level Genome Assembly of Andrographis paniculata. |
| Database_name | NCBI |
|---|
Antirrhinum_hispanicum
| References | Reference_title |
|---|---|
| The snapdragon genomes reveal the evolutionary dynamics of the S locus supergene. |
| Database_name | NGDC |
|---|
Antirrhinum_majus
| References | Reference_title |
|---|---|
| Genome structure and evolution of Antirrhinum majus L |
| Database_name | snapdragon genome database |
|---|
Boea_hygrometrica
| References | Reference_title |
|---|---|
| The resurrection genome of Boea hygrometrica: A blueprint for survival of dehydration. Xiao L, et al. Proc Natl Acad Sci U S A 2015 May 5 |
| Database_name | NCBI |
|---|
Buddleja_alternifolia
| References | Reference_title |
|---|---|
| Genome-wide analysis of butterfly bush (Buddleja alternifolia) in three uplands provides insights into biogeography, demography and speciation. |
| Database_name | NCBI |
|---|
Callicarpa_americana
| References | Reference_title |
|---|---|
| The Reference Genome Sequence of Scutellaria baicalensis Provides Insights into the Evolution of Wogonin Biosynthesis |
| Database_name | GigaDB |
|---|
Erythranthe_guttatus
| References | Reference_title |
|---|---|
| Fine-scale variation in meiotic recombination in Mimulus inferred from population shotgun sequencing. |
| Database_name | NCBI |
|---|
Erythranthe_luteus
| References | Reference_title |
|---|---|
| Subgenome Dominance in an Interspecific Hybrid, Synthetic Allopolyploid, and a 140-Year-Old Naturally Established Neo-Allopolyploid Monkeyflower. |
| Database_name | CoGe |
|---|
Fraxinus_excelsior
| References | Reference_title |
|---|---|
| Genome sequence and genetic diversity of European ash trees |
| Database_name | ASH |
|---|
Fraxinus_pennsylvanica
| References | Reference_title |
|---|---|
| A high-quality reference genome for Fraxinus pennsylvanica for ash species restoration and research |
| Database_name | Zenodo |
|---|
Genlisea_aurea
| References | Reference_title |
|---|---|
| Comparative genomic analysis of Genlisea (corkscrew plants-Lentibulariaceae) chloroplast genomes reveals an increasing loss of the ndh genes |
| Database_name | NCBI |
|---|
Handroanthus_impetiginosus
| References | Reference_title |
|---|---|
| Genome assembly of the Pink Ipe (Handroanthus impetiginosus, Bignoniaceae), a highly valued, ecologically keystone Neotropical timber forest tree |
| Database_name | NCBI |
|---|
Hyssopus_officinalis
| References | Reference_title |
|---|---|
| The evolutionary origins of the cat attractant nepetalactone in catnip. |
| Database_name | DRYAD |
|---|
Jacaranda_mimosifolia
| References | Reference_title |
|---|---|
| Chromosomal-level reference genome of the neotropical tree Jacaranda mimosifolia D. Don. |
| Database_name | figshare |
|---|
Jasminum_sambac
| References | Reference_title |
|---|---|
| Genomes of single- and double-petal jasmines (Jasminum sambac) provide insights into their divergence time and structural variations |
| Database_name | NGDC |
|---|
Lindenbergia_luchunensis
| References | Reference_title |
|---|---|
| Comparative genomics of orobanchaceous species with different parasitic lifestyles reveals the origin and stepwise evolution of plant parasitism. |
| Database_name | NGDC |
|---|
Mimulus_guttatus
| References | Reference_title |
|---|---|
| Resolution of deep angiosperm phylogeny using conserved nuclear genes and estimates of early divergence times. Zeng L, et al. Nat Commun 2014 Sep 24 |
| Database_name | Phytozome |
|---|
Mimulus_luteus
| References | Reference_title |
|---|---|
| Subgenome Dominance in an Interspecific Hybrid, Synthetic Allopolyploid, and a 140-Year-Old Naturally Established Neo-Allopolyploid Monkeyflower |
| Database_name | CoGe |
|---|
Misopates_orontium
| References | Reference_title |
|---|---|
| The snapdragon genomes reveal the evolutionary dynamics of the S locus supergene. |
| Database_name | NGDC |
|---|
Nepeta_cataria
| References | Reference_title |
|---|---|
| The evolutionary origins of the cat attractant nepetalactone in catnip. |
| Database_name | DRYAD |
|---|
Nepeta_mussinii
| References | Reference_title |
|---|---|
| The evolutionary origins of the cat attractant nepetalactone in catnip. |
| Database_name | DRYAD |
|---|
Olea_europaea
| References | Reference_title |
|---|---|
| Genomic evidence for recurrent genetic admixture during the domestication of Mediterranean olive trees (Olea europaea L.) |
| Database_name | Phytozome |
|---|
Origanum_majorana
| References | Reference_title |
|---|---|
| Genome sequencing of four culinary herbs reveals terpenoid genes underlying chemodiversity in the Nepetoideae. |
| Database_name | DRYAD |
|---|
Origanum_vulgare
| References | Reference_title |
|---|---|
| Genome sequencing of four culinary herbs reveals terpenoid genes underlying chemodiversity in the Nepetoideae. |
| Database_name | DRYAD |
|---|
Orobanche_aegyptiaca
| References | Reference_title |
|---|---|
| Comparative genomics of orobanchaceous species with different parasitic lifestyles reveals the origin and stepwise evolution of plant parasitism. |
| Database_name | National Genomics Data Center |
|---|
Orobanche_cumana
| References | Reference_title |
|---|---|
| Comparative genomics of orobanchaceous species with different parasitic lifestyles reveals the origin and stepwise evolution of plant parasitism. |
| Database_name | National Genomics Data Center |
|---|
Paulownia_fortunei
| References | Reference_title |
|---|---|
| Construction of a High-Density Paulownia Genetic Map and QTL Mapping of Important Phenotypic Traits Based on Genome Assembly and Whole-Genome Resequencing. |
| Database_name | NCBI |
|---|
Perilla_frutescens
| References | Reference_title |
|---|---|
| A highly contiguous genome assembly of red perilla (Perilla frutescens) domesticated in Japan |
| Database_name | figshare |
|---|
Petrea_volubilis
| References | Reference_title |
|---|---|
| Chromosome-scale assembly of the Verbenaceae species Queen's Wreath (Petrea volubilis L.). |
| Database_name | figshare |
|---|
Phtheirospermum_japonicum
| References | Reference_title |
|---|---|
| Ethylene signaling mediates host invasion by parasitic plants |
| Database_name | NCBI |
|---|
Picrorhiza_kurrooa
| References | Reference_title |
|---|---|
| The first draft genome of Picrorhiza kurrooa, an endangered medicinal herb from Himalayas. |
| Database_name | Picro-DB |
|---|
Pogostemon_cablin
| References | Reference_title |
|---|---|
| Building an octaploid genome and transcriptome of the medicinal plant Pogostemon cablin from Lamiales |
| Database_name | Figshare |
|---|
Salvia_bowleyana
| References | Reference_title |
|---|---|
| Insights into salvianolic acid B biosynthesis from chromosome-scale assembly of the Salvia bowleyana genome. |
| Database_name | CNGB |
|---|
Salvia_hispanica
| References | Reference_title |
|---|---|
| A chromosome-level genome assembly of chia provides insights into high omega-3 content and coat color variation of its seeds |
| Database_name | Genhua |
|---|
Salvia_rosmarinus
| References | Reference_title |
|---|---|
| The chromosome-scale assembly of the Salvia rosmarinus genome provides insight into carnosic acid biosynthesis |
| Database_name | Figshare |
|---|
Salvia_splendens
| References | Reference_title |
|---|---|
| High-quality assembly of the reference genome for scarlet sage, Salvia splendens, an economically important ornamental plant |
| Database_name | NCBI |
|---|
Scutellaria_baicalensis
| References | Reference_title |
|---|---|
| Whole genome and transcriptome reveal flavone accumulation in Scutellaria baicalensis roots. |
| Database_name | NGDC |
|---|
Sesamum_indicum
| References | Reference_title |
|---|---|
| Updated sesame genome assembly and fine mapping of plant height and seed coat color QTLs using a new high-density genetic map. Wang L, et al. BMC Genomics 2016 Jan 5 |
| Database_name | NCBI |
|---|
Striga_asiatica
| References | Reference_title |
|---|---|
| Genome Sequence of Striga asiatica Provides Insight into the Evolution of Plant Parasitism. Yoshida S, et al. Curr Biol 2019 Sep 23 |
| Database_name | NCBI |
|---|
Striga_hermonthica
| References | Reference_title |
|---|---|
| Genome-enabled discovery of candidate virulence loci in Striga hermonthica, a devastating parasite of African cereal crops. |
| Database_name | NCBI |
|---|
Strobilanthes_cusia
| References | Reference_title |
|---|---|
| Blue genome: chromosome-scale genome reveals the evolutionary and molecular basis of indigo biosynthesis in Strobilanthes cusia |
| Database_name | Strobilanthes Cusia Genome Database |
|---|
Utricularia_gibba
| References | Reference_title |
|---|---|
| Long-read sequencing uncovers the adaptive topography of a carnivorous plant genome. |
| Database_name | COGE |
|---|
Utricularia_reniformis
| References | Reference_title |
|---|---|
| The Terrestrial Carnivorous Plant Utricularia reniformis Sheds Light on Environmental and Life-Form Genome Plasticity. |
| Database_name | COGE |
|---|
Akebia_trifoliata
| References | Reference_title |
|---|---|
| The chromosome-level genome of Akebia trifoliata as an important resource to study plant evolution and environmental adaptation in the Cretaceous |
| Database_name | NGDC |
|---|
Aquilegia_coerulea
| References | Reference_title |
|---|---|
| The Aquilegia genome provides insight into adaptive radiation and reveals an extraordinarily polymorphic chromosome with a unique history |
| Database_name | Phytozome |
|---|
Coptis_chinensis
| References | Reference_title |
|---|---|
| Analysis of the Coptis chinensis genome reveals the diversification of protoberberine-type alkaloids |
| Database_name | NCBI |
|---|
Corydalis_tomentella
| References | Reference_title |
|---|---|
| The genome of Corydalis reveals the evolution of benzylisoquinoline alkaloid biosynthesis in Ranunculales |
| Database_name | NGDC |
|---|
Epimedium_pubescens
| References | Reference_title |
|---|---|
| The discovery of a key prenyltransferase gene assisted by a chromosome-level Epimedium pubescens genome |
| Database_name | NGDC |
|---|
Kingdonia_uniflora
| References | Reference_title |
|---|---|
| Genome Sequencing of the Endangered Kingdonia uniflora (Circaeasteraceae, Ranunculales) Reveals Potential Mechanisms of Evolutionary Specialization |
| Database_name | NCBI |
|---|
Macleaya_cordata
| References | Reference_title |
|---|---|
| The Genome of Medicinal Plant Macleaya cordata Provides New Insights into Benzylisoquinoline Alkaloids Metabolism |
| Database_name | NCBI |
|---|
Papaver_rhoeas
| References | Reference_title |
|---|---|
| Three chromosome-scale Papaver genomes reveal punctuated patchwork evolution of the morphinan and noscapine biosynthesis pathway |
| Database_name | Github |
|---|
Papaver_setigerum
| References | Reference_title |
|---|---|
| Three chromosome-scale Papaver genomes reveal punctuated patchwork evolution of the morphinan and noscapine biosynthesis pathway |
| Database_name | Github |
|---|
Papaver_somniferum
| References | Reference_title |
|---|---|
| Three chromosome-scale Papaver genomes reveal punctuated patchwork evolution of the morphinan and noscapine biosynthesis pathway |
| Database_name | Github |
|---|
Stephania_japonica
Thalictrum_thalictroides
| References | Reference_title |
|---|---|
| Genomic and transcriptomic resources for candidate gene discovery in the Ranunculids |
| Database_name | NCBI |
|---|
Aldrovanda_vesiculosa
| References | Reference_title |
|---|---|
| Genomes of the Venus Flytrap and Close Relatives Unveil the Roots of Plant Carnivory |
| Database_name | CARNIVOROM |
|---|
Amaranthus_cruentus
| Database_name | nan |
|---|
Amaranthus_hybridus
| References | Reference_title |
|---|---|
| Draft Genomes of Amaranthus tuberculatus, Amaranthus hybridus, and Amaranthus palmeri |
| Database_name | CoGe |
|---|
Amaranthus_hypochondriacus
| References | Reference_title |
|---|---|
| The Amaranth Genome: Genome, Transcriptome, and Physical Map Assembly |
| Database_name | Phytozome |
|---|
Amaranthus_palmeri
| References | Reference_title |
|---|---|
| Draft Genomes of Amaranthus tuberculatus, Amaranthus hybridus, and Amaranthus palmeri |
| Database_name | CoGe |
|---|
Amaranthus_tuberculatus
| References | Reference_title |
|---|---|
| Draft Genomes of Amaranthus tuberculatus, Amaranthus hybridus, and Amaranthus palmeri |
| Database_name | CoGe |
|---|
Atriplex_hortensis
| References | Reference_title |
|---|---|
| A Chromosome-Scale Assembly of the Garden Orach (Atriplex hortensis L.) Genome Using Oxford Nanopore Sequencing |
| Database_name | nan |
|---|
Beta_patula
| References | Reference_title |
|---|---|
| Genomes of the wild beets Beta patula and Beta vulgaris ssp. Maritima |
| Database_name | The Beta vulgaris Resource |
|---|
Beta_vulgaris
| References | Reference_title |
|---|---|
| Genomes of the wild beets Beta patula and Beta vulgaris ssp. maritima |
| Database_name | Phytozome |
|---|
Bougainvillea_x_buttiana
| References | Reference_title |
|---|---|
| A high-quality Bougainvillea genome provides new insights into the evolutionary history and pigment biosynthetic pathways in the Caryophyllales. |
| Database_name | CNSA |
|---|
Carnegiea_gigantea
| References | Reference_title |
|---|---|
| Extensive gene tree discordance and hemiplasy shaped the genomes of North American columnar cacti |
| Database_name | Dryad |
|---|
Chenopodium_pallidicaule
| References | Reference_title |
|---|---|
| The genome of Chenopodium pallidicaule: An emerging Andean super grain |
| Database_name | CoGe |
|---|
Chenopodium_quinoa
| References | Reference_title |
|---|---|
| A high-quality genome assembly of quinoa provides insights into the molecular basis of salt bladder-based salinity tolerance and the exceptional nutritional value |
| Database_name | Phytozome |
|---|
Chenopodium_watsonii
| References | Reference_title |
|---|---|
| A chromosome-scale reference of Chenopodium watsonii helps elucidate relationships within the North American A-genome Chenopodium species and with quinoa. |
| Database_name | COGE |
|---|
Dianthus_caryophyllus
| References | Reference_title |
|---|---|
| A chromosome-scale and haplotype-resolved genome assembly of carnation (Dianthus caryophyllus) based on high-fidelity sequencing. |
| Database_name | CNSA |
|---|
Dionaea_muscipula
| References | Reference_title |
|---|---|
| Genomes of the Venus Flytrap and Close Relatives Unveil the Roots of Plant Carnivory |
| Database_name | CARNIVOROM |
|---|
Drosera_spatulata
| References | Reference_title |
|---|---|
| Genomes of the Venus Flytrap and Close Relatives Unveil the Roots of Plant Carnivory |
| Database_name | CARNIVOROM |
|---|
Fagopyrum_cymosum
| References | Reference_title |
|---|---|
| Comparison of buckwheat genomes reveals the genetic basis of metabolomic divergence and ecotype differentiation. |
| Database_name | Figshare |
|---|
Fagopyrum_esculentum
| References | Reference_title |
|---|---|
| Assembly of the draft genome of buckwheat and its applications in identifying agronomically useful genes |
| Database_name | BGDB |
|---|
Fagopyrum_homotropicum
| References | Reference_title |
|---|---|
| Genome sequencing reveals the genetic architecture of heterostyly and domestication history of common buckwheat |
| Database_name | Selfdb |
|---|
Fagopyrum_tataricum
| References | Reference_title |
|---|---|
| The Tartary Buckwheat Genome Provides Insights into Rutin Biosynthesis and Abiotic Stress Tolerance |
| Database_name | MBKBASE |
|---|
Fallopia_multiflora
| References | Reference_title |
|---|---|
| The first chromosome-level Fallopia multiflora genome assembly provides insights into stilbene biosynthesis. |
| Database_name | Figshare |
|---|
Gypsophila_paniculata
| References | Reference_title |
|---|---|
| The chromosome-level genome of Gypsophila paniculata reveals the molecular mechanism of floral development and ethylene insensitivity. |
| Database_name | CNSA |
|---|
Haloxylon_ammodendron
| References | Reference_title |
|---|---|
| Chromosome-level genome assembly of a xerophytic plant, Haloxylon ammodendron |
| Database_name | Figshare |
|---|
Hylocereus_undatus
| References | Reference_title |
|---|---|
| A chromosome-scale genome sequence of pitaya (Hylocereus undatus) provides novel insights into the genome evolution and regulation of betalain biosynthesis |
| Database_name | nan |
|---|
Mesembryanthemum_crystallinum
| References | Reference_title |
|---|---|
| High-quality ice plant reference genome analysis provides insights into genome evolution and allows exploration of genes involved in the transition from C3 to CAM pathways |
| Database_name | SelfDB |
|---|
Polygonum_cuspidatum
| References | Reference_title |
|---|---|
| Assembly and Annotation of a Draft Genome of the Medicinal Plant Polygonum cuspidatum |
| Database_name | NGDC |
|---|
Portulaca_amilis
| References | Reference_title |
|---|---|
| Gene co-expression reveals the modularity and integration of C4 and CAM in Portulaca. |
| Database_name | JGI |
|---|
Portulaca_oleracea
| References | Reference_title |
|---|---|
| Gene duplications facilitate C4-CAM compatibility in common purslane |
| Database_name | NGDC |
|---|
Rheum_tanguticum
| References | Reference_title |
|---|---|
| A chromosome-scale Rhubarb (Rheum tanguticum) genome assembly provides insights into the evolution of anthraquinone biosynthesis. |
| Database_name | Figshare |
|---|
Rumex_hastatulus
| References | Reference_title |
|---|---|
| Widespread Recombination Suppression Facilitates Plant Sex Chromosome Evolution |
| Database_name | CoGe |
|---|
Selenicereus_undatus
| References | Reference_title |
|---|---|
| A chromosome-scale genome sequence of pitaya (Hylocereus undatus) provides novel insights into the genome evolution and regulation of betalain biosynthesis. |
| Database_name | Selfdb |
|---|
Silene_latifolia
| References | Reference_title |
|---|---|
| The origin and evolution of sex chromosomes, revealed by sequencing of the Silene latifolia female genome. |
| Database_name | NGDC |
|---|
Simmondsia_chinensis
| References | Reference_title |
|---|---|
| The genome of jojoba (Simmondsia chinensis): A taxonomically isolated species that directs wax ester accumulation in its seeds |
| Database_name | NGDB |
|---|
Spinacia_oleracea
| References | Reference_title |
|---|---|
| Draft genome of spinach and transcriptome diversity of 120 Spinacia accessions |
| Database_name | Phytozome |
|---|
Suaeda_aralocaspica
| References | Reference_title |
|---|---|
| A draft genome assembly of halophyte Suaeda aralocaspica, a plant that performs C4 photosynthesis within individual cells |
| Database_name | Gigascience |
|---|
Tamarix_chinensis
| References | Reference_title |
|---|---|
| Genomic analyses provide insights into the evolution and salinity adaptation of halophyte Tamarix chinensis. |
| Database_name | GigaDB |
|---|
Amaranthus_tricolor
| References | Reference_title |
|---|---|
| Chromosome-scale Amaranthus tricolor genome provides insights into the evolution of the genus Amaranthus and the mechanism of betalain biosynthesis |
| Database_name | NGDC |
|---|
Angelica_sinensis
| References | Reference_title |
|---|---|
| The chromosome-level genome of female ginseng (Angelica sinensis) provides insights into molecular mechanisms and evolution of coumarin biosynthesis |
| Database_name | CNSA |
|---|
Apium_graveolens
| References | Reference_title |
|---|---|
| The celery genome sequence reveals sequential paleo olyploidizations, karyotype evolution and resistance gene reduction in apiales |
| Database_name | CGDB |
|---|
Aralia_elata
| References | Reference_title |
|---|---|
| Deletion and tandem duplications of biosynthetic genes drive the diversity of triterpenoids in Aralia elata |
| Database_name | Dryad |
|---|
Coriandrum_sativum
| References | Reference_title |
|---|---|
| Deciphering the high-quality genome sequence of coriander that causes controversial feelings |
| Database_name | CGDB |
|---|
Daucus_carota
| References | Reference_title |
|---|---|
| A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution |
| Database_name | JGI |
|---|
Panax_ginseng
| References | Reference_title |
|---|---|
| Reshuffling of the ancestral core-eudicot genome shaped chromatin topology and epigenetic modification in Panax |
| Database_name | NGDC |
|---|
Panax_japonicus
| References | Reference_title |
|---|---|
| Reshuffling of the ancestral core-eudicot genome shaped chromatin topology and epigenetic modification in Panax |
| Database_name | NGDC |
|---|
Panax_notoginseng
| References | Reference_title |
|---|---|
| The Chromosome Level Genome and Genome-wide Association Study for the Agronomic Traits of Panax Notoginseng |
| Database_name | CNGBdb |
|---|
Panax_quinquefolius
| References | Reference_title |
|---|---|
| Reshuffling of the ancestral core-eudicot genome shaped chromatin topology and epigenetic modification in Panax |
| Database_name | NGDC |
|---|
Panax_stipuleanatus
| References | Reference_title |
|---|---|
| Reshuffling of the ancestral core-eudicot genome shaped chromatin topology and epigenetic modification in Panax |
| Database_name | NGDC |
|---|
Anisodus_acutangulus
| References | Reference_title |
|---|---|
| Genomic and structural basis for evolution of tropane alkaloid biosynthesis |
| Database_name | NCBI |
|---|
Anisodus_luridus
| References | Reference_title |
|---|---|
| Phylogenomic discovery of deleterious mutations facilitates hybrid potato breeding |
| Database_name | National Genomics Data Center |
|---|
Atropa_belladonna
| References | Reference_title |
|---|---|
| Revealing evolution of tropane alkaloid biosynthesis by analyzing two genomes in the Solanaceae family |
| Database_name | National Genomics Data Center |
|---|
Capsicum_annuum
| References | Reference_title |
|---|---|
| Genome sequence of the hot pepper provides insights into the evolution of pungency in Capsicum species |
| Database_name | pepper genome |
|---|
Capsicum_baccatum
| References | Reference_title |
|---|---|
| New reference genome sequences of hot pepper reveal the massive evolution of plant disease-resistance genes by retroduplication |
| Database_name | NCBI |
|---|
Capsicum_chinense
| References | Reference_title |
|---|---|
| New reference genome sequences of hot pepper reveal the massive evolution of plant disease-resistance genes by retroduplication |
| Database_name | NCBI |
|---|
Capsicum_pubescens
| References | Reference_title |
|---|---|
| Genomes of cultivated and wild Capsicum species provide insights into pepper domestication and population differentiation |
| Database_name | PepperGD |
|---|
Coffea_humblotiana
Cuscuta_australis
| References | Reference_title |
|---|---|
| Large-scale gene losses underlie the genome evolution of parasitic plant Cuscuta australis |
| Database_name | NCBI |
|---|
Cuscuta_campestris
| References | Reference_title |
|---|---|
| Convergent horizontal gene transfer and cross-talk of mobile nucleic acids in parasitic plants |
| Database_name | NCBI |
|---|
Cuscuta_epithymum
| References | Reference_title |
|---|---|
| Disruption of the standard kinetochore in holocentric Cuscuta species. |
| Database_name | NCBI |
|---|
Cuscuta_europaea
| References | Reference_title |
|---|---|
| Disruption of the standard kinetochore in holocentric Cuscuta species. |
| Database_name | NCBI |
|---|
Datura_inoxia
| References | Reference_title |
|---|---|
| Phylogenomic discovery of deleterious mutations facilitates hybrid potato breeding |
| Database_name | National Genomics Data Center |
|---|
Datura_stramonium
| References | Reference_title |
|---|---|
| Datura genome reveals duplications of psychoactive alkaloid biosynthetic genes and high mutation rate following tissue culture |
| Database_name | NCBI |
|---|
Iochroma_cyaneum
| References | Reference_title |
|---|---|
| Genome sequence for the blue-flowered Andean shrub Iochroma cyaneum reveals extensive discordance across the berry clade of Solanaceae. |
| Database_name | Sol Genomics Network |
|---|
Ipomoea_aquatica
| References | Reference_title |
|---|---|
| The chromosome-based genome provides insights into the evolution in water spinach |
| Database_name | NGDC |
|---|
Ipomoea_batatas
| References | Reference_title |
|---|---|
| Haplotype-resolved sweet potato genome traces back its hexaploidization history. Yang J, et al. Nat Plants 2017 Sep |
| Database_name | selfDB |
|---|
Ipomoea_cairica
| References | Reference_title |
|---|---|
| A chromosome-level reference genome of a Convolvulaceae species Ipomoea cairica. |
| Database_name | AGIS |
|---|
Ipomoea_nil
| References | Reference_title |
|---|---|
| Genome sequence and analysis of the Japanese morning glory Ipomoea nil |
| Database_name | NCBI |
|---|
Ipomoea_triloba
| References | Reference_title |
|---|---|
| The wild sweetpotato (Ipomoea trifida) genome provides insights into storage root development |
| Database_name | NCBI |
|---|
Lycianthes_biflora
| References | Reference_title |
|---|---|
| Phylogenomic discovery of deleterious mutations facilitates hybrid potato breeding |
| Database_name | National Genomics Data Center |
|---|
Lycium_barbarum
| References | Reference_title |
|---|---|
| Phylogenomic discovery of deleterious mutations facilitates hybrid potato breeding |
| Database_name | National Genomics Data Center |
|---|
Nicandra_physalodes
| References | Reference_title |
|---|---|
| Phylogenomic discovery of deleterious mutations facilitates hybrid potato breeding |
| Database_name | National Genomics Data Center |
|---|
Nicotiana_attenuata
| References | Reference_title |
|---|---|
| Wild tobacco genomes reveal the evolution of nicotine biosynthesis |
| Database_name | NCBI |
|---|
Nicotiana_benthamiana
| References | Reference_title |
|---|---|
| Phylogenomic discovery of deleterious mutations facilitates hybrid potato breeding |
| Database_name | National Genomics Data Center |
|---|
Nicotiana_longiflora
| References | Reference_title |
|---|---|
| Phylogenomic discovery of deleterious mutations facilitates hybrid potato breeding |
| Database_name | National Genomics Data Center |
|---|
Nicotiana_sylvestris
| References | Reference_title |
|---|---|
| Reference genomes and transcriptomes of Nicotiana sylvestris and Nicotiana tomentosiformis |
| Database_name | NCBI |
|---|
Nicotiana_tabacum
| References | Reference_title |
|---|---|
| A reference genome for Nicotiana tabacum enables map-based cloning of homeologous loci implicated in nitrogen utilization efficiency. |
| Database_name | Sol Genomics Network |
|---|
Nicotiana_tomentosiformis
| References | Reference_title |
|---|---|
| Reference genomes and transcriptomes of Nicotiana sylvestris and Nicotiana tomentosiformis |
| Database_name | NCBI |
|---|
Petunia_axillaris
| References | Reference_title |
|---|---|
| Insight into the evolution of the Solanaceae from the parental genomes of Petunia hybrida |
| Database_name | SGN |
|---|
Petunia_inflata
| References | Reference_title |
|---|---|
| Insight into the evolution of the Solanaceae from the parental genomes of Petunia hybrida |
| Database_name | SGN |
|---|
Physalis_angulata
| References | Reference_title |
|---|---|
| Phylogenomic discovery of deleterious mutations facilitates hybrid potato breeding |
| Database_name | National Genomics Data Center |
|---|
Physalis_grisea
| References | Reference_title |
|---|---|
| Establishing Physalis as a Solanaceae model system enables genetic reevaluation of the inflated calyx syndrome |
| Database_name | github |
|---|
Physalis_pruinosa
| References | Reference_title |
|---|---|
| Establishing Physalis as a Solanaceae model system enables genetic reevaluation of the inflated calyx syndrome |
| Database_name | github |
|---|
Physalis_pubescens
| References | Reference_title |
|---|---|
| The Physalis floridana genome provides insights into the biochemical and morphological evolution of Physalis fruits |
| Database_name | CNGB |
|---|
Przewalskia_tangutica
| References | Reference_title |
|---|---|
| The genome sequence and demographic history of Przewalskia tangutica (Solanaceae), an endangered alpine plant on the Qinghai-Tibet Plateau. |
| Database_name | figshare |
|---|
Solanum_aethiopicum
| References | Reference_title |
|---|---|
| Draft genome sequence of Solanum aethiopicum provides insights into disease resistance, drought tolerance, and the evolution of the genome |
| Database_name | GigaDB |
|---|
Solanum_americanum
| References | Reference_title |
|---|---|
| Phylogenomic discovery of deleterious mutations facilitates hybrid potato breeding |
| Database_name | National Genomics Data Center |
|---|
Solanum_andreanum
| References | Reference_title |
|---|---|
| Genome evolution and diversity of wild and cultivated potatoes |
| Database_name | Potato Database |
|---|
Solanum_atropurpureum
| References | Reference_title |
|---|---|
| Phylogenomic discovery of deleterious mutations facilitates hybrid potato breeding |
| Database_name | National Genomics Data Center |
|---|
Solanum_boliviense
| References | Reference_title |
|---|---|
| Genome evolution and diversity of wild and cultivated potatoes |
| Database_name | Potato Database |
|---|
Solanum_brevicaule
| References | Reference_title |
|---|---|
| Genome evolution and diversity of wild and cultivated potatoes |
| Database_name | Potato Database |
|---|
Solanum_buesii
| References | Reference_title |
|---|---|
| Genome evolution and diversity of wild and cultivated potatoes |
| Database_name | Potato Database |
|---|
Solanum_bulbocastanum
| References | Reference_title |
|---|---|
| Genome evolution and diversity of wild and cultivated potatoes |
| Database_name | Potato Database |
|---|
Solanum_burkartii
| References | Reference_title |
|---|---|
| Genome evolution and diversity of wild and cultivated potatoes |
| Database_name | Potato Database |
|---|
Solanum_cajamarquense
| References | Reference_title |
|---|---|
| Genome evolution and diversity of wild and cultivated potatoes |
| Database_name | Potato Database |
|---|
Solanum_candolleanum
| References | Reference_title |
|---|---|
| Genome evolution and diversity of wild and cultivated potatoes |
| Database_name | Potato Database |
|---|
Solanum_capsicoides
| References | Reference_title |
|---|---|
| Phylogenomic discovery of deleterious mutations facilitates hybrid potato breeding |
| Database_name | National Genomics Data Center |
|---|
Solanum_chacoense
| References | Reference_title |
|---|---|
| Genome evolution and diversity of wild and cultivated potatoes |
| Database_name | Potato Database |
|---|
Solanum_chilense
| References | Reference_title |
|---|---|
| The de novo Reference Genome and Transcriptome Assemblies of the Wild Tomato Species Solanum chilense Highlights Birth and Death of NLR Genes Between Tomato Species |
| Database_name | NCBI |
|---|
Solanum_chomatophilum
| References | Reference_title |
|---|---|
| Genome evolution and diversity of wild and cultivated potatoes |
| Database_name | Potato Database |
|---|
Solanum_commersonii
| References | Reference_title |
|---|---|
| The Solanum commersonii Genome Sequence Provides Insights into Adaptation to Stress Conditions and Genome Evolution of Wild Potato Relatives |
| Database_name | NCBI |
|---|
Solanum_dulcamara
Solanum_erianthum
| References | Reference_title |
|---|---|
| Phylogenomic discovery of deleterious mutations facilitates hybrid potato breeding |
| Database_name | National Genomics Data Center |
|---|
Solanum_etuberosum
| References | Reference_title |
|---|---|
| Genome evolution and diversity of wild and cultivated potatoes |
| Database_name | Potato Database |
|---|
Solanum_habrochaites
| References | Reference_title |
|---|---|
| A draft genome assembly for the heterozygous wild tomato Solanum habrochaites highlights haplotypic structural variations of intracellular immune receptors |
| Database_name | SGN |
|---|
Solanum_jamesii
| References | Reference_title |
|---|---|
| Genome evolution and diversity of wild and cultivated potatoes |
| Database_name | Potato Database |
|---|
Solanum_laciniatum
| References | Reference_title |
|---|---|
| Phylogenomic discovery of deleterious mutations facilitates hybrid potato breeding |
| Database_name | National Genomics Data Center |
|---|
Solanum_lignicaule
| References | Reference_title |
|---|---|
| Genome evolution and diversity of wild and cultivated potatoes |
| Database_name | Potato Database |
|---|
Solanum_lycopersicoides
| References | Reference_title |
|---|---|
| A Solanum lycopersicoides reference genome facilitates insights into tomato specialized metabolism and immunity |
| Database_name | SGN |
|---|
Solanum_lycopersicum
| References | Reference_title |
|---|---|
| The tomato genome sequence provides insights into fleshy fruit evolution |
| Database_name | Phytozome |
|---|
Solanum_lyratum
| References | Reference_title |
|---|---|
| Phylogenomic discovery of deleterious mutations facilitates hybrid potato breeding |
| Database_name | National Genomics Data Center |
|---|
Solanum_macrocarpon
| References | Reference_title |
|---|---|
| Phylogenomic discovery of deleterious mutations facilitates hybrid potato breeding |
| Database_name | National Genomics Data Center |
|---|
Solanum_mammosum
| References | Reference_title |
|---|---|
| Phylogenomic discovery of deleterious mutations facilitates hybrid potato breeding |
| Database_name | National Genomics Data Center |
|---|
Solanum_melongena
| References | Reference_title |
|---|---|
| A high-quality chromosome-level genome assembly reveals genetics for important traits in eggplant |
| Database_name | Eggplant Genome Database |
|---|
Solanum_morelliforme
| References | Reference_title |
|---|---|
| Genome evolution and diversity of wild and cultivated potatoes |
| Database_name | Potato Database |
|---|
Solanum_multiinterruptum
| References | Reference_title |
|---|---|
| Genome evolution and diversity of wild and cultivated potatoes |
| Database_name | Potato Database |
|---|
Solanum_muricatum
| References | Reference_title |
|---|---|
| Chromosome-level pepino genome provides insights into genome evolution and anthocyanin biosynthesis in Solanaceae |
| Database_name | NGDC |
|---|
Solanum_neorossii
| References | Reference_title |
|---|---|
| Genome evolution and diversity of wild and cultivated potatoes |
| Database_name | Potato Database |
|---|
Solanum_ochranthum
| References | Reference_title |
|---|---|
| Phylogenomic discovery of deleterious mutations facilitates hybrid potato breeding |
| Database_name | National Genomics Data Center |
|---|
Solanum_palustre
| References | Reference_title |
|---|---|
| Genome evolution and diversity of wild and cultivated potatoes |
| Database_name | Potato Database |
|---|
Solanum_paucissectum
| References | Reference_title |
|---|---|
| Genome evolution and diversity of wild and cultivated potatoes |
| Database_name | Potato Database |
|---|
Solanum_pennellii
| References | Reference_title |
|---|---|
| De novo Assembly of a New Solanum pennellii Accession Using Nanopore Sequencing |
| Database_name | NCBI |
|---|
Solanum_pimpinellifolium
| References | Reference_title |
|---|---|
| Genome of Solanum pimpinellifolium provides insights into structural variants during tomato breeding |
| Database_name | Sol Genomics Network |
|---|
Solanum_pinnatisectum
| References | Reference_title |
|---|---|
| Genome evolution and diversity of wild and cultivated potatoes |
| Database_name | Potato Database |
|---|
Solanum_piurae
| References | Reference_title |
|---|---|
| Genome evolution and diversity of wild and cultivated potatoes |
| Database_name | Potato Database |
|---|
Solanum_pseudocapsicum
| References | Reference_title |
|---|---|
| Phylogenomic discovery of deleterious mutations facilitates hybrid potato breeding |
| Database_name | National Genomics Data Center |
|---|
Solanum_retroflexum
| References | Reference_title |
|---|---|
| Phylogenomic discovery of deleterious mutations facilitates hybrid potato breeding |
| Database_name | National Genomics Data Center |
|---|
Solanum_rostratum
| References | Reference_title |
|---|---|
| Chromosome-level genome assembly and annotation of the prickly nightshade Solanum rostratum Dunal. |
| Database_name | figshare |
|---|
Solanum_scabrum
| References | Reference_title |
|---|---|
| Phylogenomic discovery of deleterious mutations facilitates hybrid potato breeding |
| Database_name | National Genomics Data Center |
|---|
Solanum_seaforthianum
| References | Reference_title |
|---|---|
| Phylogenomic discovery of deleterious mutations facilitates hybrid potato breeding |
| Database_name | National Genomics Data Center |
|---|
Solanum_septemlobum
| References | Reference_title |
|---|---|
| Phylogenomic discovery of deleterious mutations facilitates hybrid potato breeding |
| Database_name | National Genomics Data Center |
|---|
Solanum_sogarandinum
| References | Reference_title |
|---|---|
| Genome evolution and diversity of wild and cultivated potatoes |
| Database_name | Potato Database |
|---|
Solanum_spirale
| References | Reference_title |
|---|---|
| Phylogenomic discovery of deleterious mutations facilitates hybrid potato breeding |
| Database_name | National Genomics Data Center |
|---|
Solanum_stenotomum
| References | Reference_title |
|---|---|
| Genome assembly of primitive cultivated potato Solanum stenotomum provides insights into potato evolution |
| Database_name | NCBI |
|---|
Solanum_stramoniifolium
| References | Reference_title |
|---|---|
| Phylogenomic discovery of deleterious mutations facilitates hybrid potato breeding |
| Database_name | National Genomics Data Center |
|---|
Solanum_torvum
| References | Reference_title |
|---|---|
| Phylogenomic discovery of deleterious mutations facilitates hybrid potato breeding |
| Database_name | National Genomics Data Center |
|---|
Solanum_tuberosum
| References | Reference_title |
|---|---|
| The gap-free potato genome assembly reveals large tandem gene clusters of agronomical importance in highly repeated genomic regions |
| Database_name | bioinformaticslab |
|---|
Solanum_vernei
| References | Reference_title |
|---|---|
| Genome evolution and diversity of wild and cultivated potatoes |
| Database_name | Potato Database |
|---|
Solanum_verrucosum
| References | Reference_title |
|---|---|
| A de novo genome assembly of Solanum verrucosum Schlechtendal, a Mexican diploid species geographically isolated from other diploid A-genome species of potato relatives |
| Database_name | NCBI |
|---|
Solanum_viarum
| References | Reference_title |
|---|---|
| Phylogenomic discovery of deleterious mutations facilitates hybrid potato breeding |
| Database_name | National Genomics Data Center |
|---|
Solanum_wrightii
| References | Reference_title |
|---|---|
| Phylogenomic discovery of deleterious mutations facilitates hybrid potato breeding |
| Database_name | National Genomics Data Center |
|---|
Tubocapsicum_anomalum
| References | Reference_title |
|---|---|
| Phylogenomic discovery of deleterious mutations facilitates hybrid potato breeding |
| Database_name | National Genomics Data Center |
|---|
Aquilaria_sinensis
| References | Reference_title |
|---|---|
| Genome sequence of the agarwood tree Aquilaria sinensis (Lour.) Spreng: the first chromosome-level draft genome in the Thymelaeceae family |
| Database_name | GigaDB |
|---|
Bombax_ceiba
| References | Reference_title |
|---|---|
| De novo genome assembly of the red silk cotton tree (Bombax ceiba) |
| Database_name | GigaDB |
|---|
Corchorus_capsularis
| References | Reference_title |
|---|---|
| Comparative genomics of two jute species and insight into fibre biogenesis |
| Database_name | NCBI |
|---|
Corchorus_olitorius
| References | Reference_title |
|---|---|
| The draft genome of Corchorus olitorius cv. JRO-524 (Navin) |
| Database_name | NCBI |
|---|
Dipterocarpus_alatus
| References | Reference_title |
|---|---|
| Thirteen Dipterocarpoideae genomes provide insights into their evolution and borneol biosynthesis. |
| Database_name | CNSA |
|---|
Dipterocarpus_gracilis
| References | Reference_title |
|---|---|
| Thirteen Dipterocarpoideae genomes provide insights into their evolution and borneol biosynthesis. |
| Database_name | CNSA |
|---|
Dipterocarpus_intricatus
| References | Reference_title |
|---|---|
| Thirteen Dipterocarpoideae genomes provide insights into their evolution and borneol biosynthesis. |
| Database_name | CNSA |
|---|
Dipterocarpus_turbinatus
| Database_name | CNGB |
|---|
Dipterocarpus_zeylanicus
| References | Reference_title |
|---|---|
| Thirteen Dipterocarpoideae genomes provide insights into their evolution and borneol biosynthesis. |
| Database_name | CNSA |
|---|
Durio_zibethinus
| References | Reference_title |
|---|---|
| The draft genome of tropical fruit durian (Durio zibethinus) |
| Database_name | NCBI |
|---|
Gossypium_anomalum
| References | Reference_title |
|---|---|
| Genomic innovation and regulatory rewiring during evolution of the cotton genus Gossypium. |
| Database_name | figshare |
|---|
Gossypium_arboreum
| References | Reference_title |
|---|---|
| Genome sequence of Gossypium herbaceum and genome updates of Gossypium arboreum and Gossypium hirsutum provide insights into cotton A-genome evolution |
| Database_name | NCBI |
|---|
Gossypium_barbadense
| References | Reference_title |
|---|---|
| Genomic diversifications of five Gossypium allopolyploid species and their impact on cotton improvement |
| Database_name | Phytozome |
|---|
Gossypium_bickii
| References | Reference_title |
|---|---|
| Genomic innovation and regulatory rewiring during evolution of the cotton genus Gossypium. |
| Database_name | figshare |
|---|
Gossypium_darwinii
| References | Reference_title |
|---|---|
| Genomic diversifications of five Gossypium allopolyploid species and their impact on cotton improvement |
| Database_name | NCBI |
|---|
Gossypium_herbaceum
| References | Reference_title |
|---|---|
| Genomic innovation and regulatory rewiring during evolution of the cotton genus Gossypium. |
| Database_name | figshare |
|---|
Gossypium_hirsutum
| References | Reference_title |
|---|---|
| Genomic diversifications of five Gossypium allopolyploid species and their impact on cotton improvement |
| Database_name | Phytozome |
|---|
Gossypium_longicalyx
| References | Reference_title |
|---|---|
| Genomic innovation and regulatory rewiring during evolution of the cotton genus Gossypium. |
| Database_name | figshare |
|---|
Gossypium_raimondii
| References | Reference_title |
|---|---|
| De novo Genome Sequence Assemblies of Gossypium raimondii and Gossypium turneri |
| Database_name | Phytozome |
|---|
Gossypium_rotundifolium
| References | Reference_title |
|---|---|
| Comparative Genome Analyses Highlight Transposon-Mediated Genome Expansion and the Evolutionary Architecture of 3D Genomic Folding in Cotton |
| Database_name | Figshare |
|---|
Gossypium_stocksii
| References | Reference_title |
|---|---|
| Genomic innovation and regulatory rewiring during evolution of the cotton genus Gossypium. |
| Database_name | figshare |
|---|
Gossypium_sturtianum
| References | Reference_title |
|---|---|
| Genomic innovation and regulatory rewiring during evolution of the cotton genus Gossypium. |
| Database_name | figshare |
|---|
Hibiscus_cannabinus
| References | Reference_title |
|---|---|
| The genome of kenaf (Hibiscus cannabinus L.) provides insights into bast fiber and leaf shape biogenesis. |
| Database_name | NGDC |
|---|
Hibiscus_syriacus
| References | Reference_title |
|---|---|
| Genome analysis of Hibiscus syriacus provides insights of polyploidization and indeterminate flowering in woody plants |
| Database_name | NCBI |
|---|
Hopea_hainanensis
| Database_name | CNGB |
|---|
Hopea_odorata
| References | Reference_title |
|---|---|
| Thirteen Dipterocarpoideae genomes provide insights into their evolution and borneol biosynthesis. |
| Database_name | CNSA |
|---|
Ochroma_pyramidale
| References | Reference_title |
|---|---|
| Chromosome-scale genomes of commercial timber trees (Ochroma pyramidale, Mesua ferrea, and Tectona grandis). |
| Database_name | figshare |
|---|
Shorea_henryana
| References | Reference_title |
|---|---|
| Thirteen Dipterocarpoideae genomes provide insights into their evolution and borneol biosynthesis. |
| Database_name | CNSA |
|---|
Shorea_leprosula
| References | Reference_title |
|---|---|
| Thirteen Dipterocarpoideae genomes provide insights into their evolution and borneol biosynthesis. |
| Database_name | CNSA |
|---|
Shorea_roxburghii
| References | Reference_title |
|---|---|
| Thirteen Dipterocarpoideae genomes provide insights into their evolution and borneol biosynthesis. |
| Database_name | CNSA |
|---|
Shorea_wangtianshuea
| References | Reference_title |
|---|---|
| Thirteen Dipterocarpoideae genomes provide insights into their evolution and borneol biosynthesis. |
| Database_name | CNSA |
|---|
Theobroma_cacao
Vatica_guangxiensis
| References | Reference_title |
|---|---|
| Thirteen Dipterocarpoideae genomes provide insights into their evolution and borneol biosynthesis. |
| Database_name | CNSA |
|---|
Vatica_odorata
| References | Reference_title |
|---|---|
| Thirteen Dipterocarpoideae genomes provide insights into their evolution and borneol biosynthesis. |
| Database_name | CNSA |
|---|
Vatica_rassak
| References | Reference_title |
|---|---|
| Thirteen Dipterocarpoideae genomes provide insights into their evolution and borneol biosynthesis. |
| Database_name | CNSA |
|---|
Arctium_lappa
| References | Reference_title |
|---|---|
| The first high-quality chromosomal genome assembly of a medicinal and edible plant Arctium lappa |
| Database_name | Figshare |
|---|
Artemisia_argyi
| References | Reference_title |
|---|---|
| A chromosome-scale genome assembly of Artemisia argyi reveals unbiased subgenome evolution and key contributions of gene duplication to volatile terpenoid diversity. |
| Database_name | National Genomics Data Center |
|---|
Carthamus_tinctorius
| References | Reference_title |
|---|---|
| The chromosome cale reference genome of safflower (Carthamus tinctorius) provides insights into linoleic acid and flavonoid biosynthesis |
| Database_name | The Genome Database of Carthamus tinctorius |
|---|
Chrysanthemum_makinoi
| References | Reference_title |
|---|---|
| De novo whole-genome assembly of Chrysanthemum makinoi, a key wild chrysanthemum. |
| Database_name | Chrysanthemum genome |
|---|
Chrysanthemum_nankingense
| References | Reference_title |
|---|---|
| The Chrysanthemum nankingense Genome Provides Insights into the Evolution and Diversification of Chrysanthemum Flowers and Medicinal Traits |
| Database_name | Chrysanthemum Genome Database |
|---|
Chrysanthemum_x_morifolium
| References | Reference_title |
|---|---|
| Analyses of a chromosome-scale genome assembly reveal the origin and evolution of cultivated chrysanthemum. |
| Database_name | figshare |
|---|
Cichorium_endivia
| References | Reference_title |
|---|---|
| The genomes of chicory, endive, great burdock and yacon provide insights into Asteraceae palaeo-polyploidization history and plant inulin production |
| Database_name | SelfDB |
|---|
Cichorium_intybus
| References | Reference_title |
|---|---|
| The genomes of chicory, endive, great burdock and yacon provide insights into Asteraceae palaeo-polyploidization history and plant inulin production |
| Database_name | SelfDB |
|---|
Codonopsis_lanceolata
| References | Reference_title |
|---|---|
| The chromosome-level genome assembly of lance asiabell (Codonopsis lanceolata), a medicinal and vegetable plant of the Campanulaceae family. |
| Database_name | figshare |
|---|
Cynara_cardunculus
| References | Reference_title |
|---|---|
| The genome sequence of the outbreeding globe artichoke constructed de novo incorporating a phase-aware low-pass sequencing strategy of F1 progeny |
| Database_name | NCBI |
|---|
Glebionis_coronaria
| References | Reference_title |
|---|---|
| Chromosome-level genome of a leaf vegetable Glebionis coronaria provides insights into the biosynthesis of monoterpenoids contributing to its special aroma |
| Database_name | figshare |
|---|
Helianthus_annuus
| References | Reference_title |
|---|---|
| The sunflower genome provides insights into oil metabolism, flowering and Asterid evolution |
| Database_name | NCBI |
|---|
Helianthus_tuberosus
| References | Reference_title |
|---|---|
| A haplotype-resolved chromosome-level genome assembly for the hexaploid Jerusalem artichoke provides insights into its origin, evolution and inulin metabolism. |
| Database_name | National Genomics Data Center |
|---|
Lactuca_saligna
| References | Reference_title |
|---|---|
| The genome of Lactuca saligna, a wild relative of lettuce, provides insight into non-host resistance to the downy mildew Bremia lactucae. |
| Database_name | NCBI |
|---|
Lactuca_virosa
| References | Reference_title |
|---|---|
| Genome assembly and analysis of Lactuca virosa: implications for lettuce breeding. |
| Database_name | NCBI |
|---|
Mikania_micrantha
| References | Reference_title |
|---|---|
| Mikania micrantha genome provides insights into the molecular mechanism of rapid growth |
| Database_name | NCBI |
|---|
Nymphoides_indica
| Database_name | CNGB |
|---|
Platycodon_grandiflorus
| References | Reference_title |
|---|---|
| Whole-genome, transcriptome, and methylome analyses provide insights into the evolution of platycoside biosynthesis in Platycodon grandiflorus, a medicinal plant |
| Database_name | Self DB |
|---|
Scalesia_atractyloides
| References | Reference_title |
|---|---|
| The genomic basis of the plant island syndrome in Darwin's giant daisies. |
| Database_name | DRYAD |
|---|
Smallanthus_sonchifolius
| References | Reference_title |
|---|---|
| The genomes of chicory, endive, great burdock and yacon provide insights into Asteraceae paleo-polyploidization history and plant inulin production. |
| Database_name | AGIS |
|---|
Stevia_rebaudiana
| References | Reference_title |
|---|---|
| The chromosome-level Stevia genome provides insights into steviol glycoside biosynthesis. |
| Database_name | figshare |
|---|
Taraxacum_koksaghyz
| References | Reference_title |
|---|---|
| Extensive sequence divergence between the reference genomes of Taraxacum kok-saghyz and Taraxacum mongolicum |
| Database_name | NGDC |
|---|
Taraxacum_mongolicum
| References | Reference_title |
|---|---|
| Extensive sequence divergence between the reference genomes of Taraxacum kok-saghyz and Taraxacum mongolicum |
| Database_name | NGDC |
|---|
Artocarpus_altilis
| References | Reference_title |
|---|---|
| Draft Genomes of Two Artocarpus Plants, Jackfruit (A. heterophyllus) and Breadfruit (A. altilis) |
| Database_name | Bioinformatics & Systems Biology |
|---|
Artocarpus_nanchuanensis
| References | Reference_title |
|---|---|
| A chromosome-level genome assembly of Artocarpus nanchuanensis (Moraceae), an extremely endangered fruit tree. |
| Database_name | GigaScience GigaDB |
|---|
Boehmeria_nivea
| References | Reference_title |
|---|---|
| Genomic analyses provide comprehensive insights into the domestication of bast fiber crop ramie (Boehmeria nivea). |
| Database_name | figshare |
|---|
Cannabis_sativa
| References | Reference_title |
|---|---|
| A high-quality reference genome of wild Cannabis sativa |
| Database_name | NCBI |
|---|
Cerasus_kanzakura
| References | Reference_title |
|---|---|
| Genome sequencing and analysis of two early-flowering cherry (Cerasus x kanzakura) varieties, kawazu-zakura and Atami-zakura |
| Database_name | GDR |
|---|
Cerasus_serrulata
| References | Reference_title |
|---|---|
| The genome of Chinese flowering cherry (Cerasus serrulata) provides new insights into Cerasus species |
| Database_name | Figshare |
|---|
Cydonia_oblonga
| References | Reference_title |
|---|---|
| De novo assembly and characterization of the first draft genome of quince (Cydonia oblonga Mill.). |
| Database_name | figshare |
|---|
Discaria_trinervis
| References | Reference_title |
|---|---|
| Phylogenomics reveals multiple losses of nitrogen-fixing root nodule symbiosis. |
| Database_name | GigaDB |
|---|
Dryas_drummondii
| References | Reference_title |
|---|---|
| Phylogenomics reveals multiple losses of nitrogen-fixing root nodule symbiosis. |
| Database_name | GigaDB |
|---|
Elaeagnus_angustifolia
| References | Reference_title |
|---|---|
| De novo assembly provides new insights into the evolution of Elaeagnus angustifolia L.. |
| Database_name | figshare |
|---|
Elaeagnus_mollis
| References | Reference_title |
|---|---|
| Genome sequence of Elaeagnus mollis, the first chromosome-level genome of the family Elaeagnaceae. |
| Database_name | figshare |
|---|
Eriobotrya_japonica
| References | Reference_title |
|---|---|
| Chromosome-level genome assembly and annotation of the loquat (Eriobotrya japonica) genome |
| Database_name | GigaDB |
|---|
Ficus_carica
| References | Reference_title |
|---|---|
| Epigenetic patterns within the haplotype phased fig (Ficus carica L.) genome. |
| Database_name | PlantGARDEN |
|---|
Ficus_hispida
| References | Reference_title |
|---|---|
| Genomes of the Banyan Tree and Pollinator Wasp Provide Insights into Fig-Wasp Coevolution. |
| Database_name | National Genomics Data Center |
|---|
Ficus_microcarpa
| References | Reference_title |
|---|---|
| Genomes of the Banyan Tree and Pollinator Wasp Provide Insights into Fig-Wasp Coevolution. |
| Database_name | National Genomics Data Center |
|---|
Fragaria_ananassa
| References | Reference_title |
|---|---|
| Origin and evolution of the octoploid strawberry genome |
| Database_name | GDR |
|---|
Fragaria_daltoniana
| References | Reference_title |
|---|---|
| Evolutionary history and pan-genome dynamics of strawberry (Fragaria spp.) |
| Database_name | GDR |
|---|
Fragaria_iinumae
| References | Reference_title |
|---|---|
| Reply to: Revisiting the origin of octoploid strawberry |
| Database_name | GDR |
|---|
Fragaria_mandshurica
| References | Reference_title |
|---|---|
| Evolutionary history and pan-genome dynamics of strawberry (Fragaria spp.) |
| Database_name | GDR |
|---|
Fragaria_nilgerrensis
| References | Reference_title |
|---|---|
| Tracing the Diploid Ancestry of the Cultivated Octoploid Strawberry |
| Database_name | GDR |
|---|
Fragaria_nubicola
| References | Reference_title |
|---|---|
| Tracing the Diploid Ancestry of the Cultivated Octoploid Strawberry |
| Database_name | GDR |
|---|
Fragaria_pentaphylla
| References | Reference_title |
|---|---|
| Evolutionary history and pan-genome dynamics of strawberry (Fragaria spp.) |
| Database_name | GDR |
|---|
Fragaria_vesca
Fragaria_viridis
| References | Reference_title |
|---|---|
| Evolutionary history and pan-genome dynamics of strawberry (Fragaria spp.) |
| Database_name | GDR |
|---|
Fragaria_x_ananassa
| References | Reference_title |
|---|---|
| Origin and evolution of the octoploid strawberry genome |
| Database_name | CoGe |
|---|
Gillenia_trifoliata
| References | Reference_title |
|---|---|
| The Gillenia trifoliata genome reveals dynamics correlated with growth and reproduction in Rosaceae |
| Database_name | GDR |
|---|
Hippophae_rhamnoides
| References | Reference_title |
|---|---|
| Genome of Hippophae rhamnoides provides insights into a conserved molecular mechanism in actinorhizal and rhizobial symbioses |
| Database_name | CNGB |
|---|
Humulus_lupulus
| References | Reference_title |
|---|---|
| A draft phased assembly of the diploid Cascade hop (Humulus lupulus) genome |
| Database_name | HopBase |
|---|
Malus_baccata
| References | Reference_title |
|---|---|
| Sequencing of a Wild Apple (Malus baccata) Genome Unravels the Differences Between Cultivated and Wild Apple Species Regarding Disease Resistance and Cold Tolerance |
| Database_name | NCBI |
|---|
Malus_domestica
| References | Reference_title |
|---|---|
| Phased diploid genome assemblies and pan-genomes provide insights into the genetic history of apple domestication |
| Database_name | GDR |
|---|
Malus_sieversii
| References | Reference_title |
|---|---|
| Phased diploid genome assemblies and pan-genomes provide insights into the genetic history of apple domestication |
| Database_name | GDR |
|---|
Malus_sylvestris
| References | Reference_title |
|---|---|
| Phased diploid genome assemblies and pan-genomes provide insights into the genetic history of apple domestication |
| Database_name | GDR |
|---|
Malus_x_domestica
| References | Reference_title |
|---|---|
| Phased diploid genome assemblies and pan-genomes provide insights into the genetic history of apple domestication |
| Database_name | Phytozome |
|---|
Morus_notabilis
| References | Reference_title |
|---|---|
| Evolutionary and functional analysis of mulberry type III polyketide synthases |
| Database_name | NCBI |
|---|
Parasponia_andersonii
| References | Reference_title |
|---|---|
| Comparative genomics of the nonlegume Parasponia reveals insights into evolution of nitrogen-fixing rhizobium symbioses |
| Database_name | NCBI |
|---|
Potentilla_anserina
| References | Reference_title |
|---|---|
| Vitis labrusca genome assembly reveals diversification between wild and cultivated grapevine genomes. |
| Database_name | figshare |
|---|
Potentilla_micrantha
| References | Reference_title |
|---|---|
| The genome sequence and transcriptome of Potentilla micrantha and their comparison to Fragaria vesca (the woodland strawberry) |
| Database_name | GigaDB |
|---|
Prinsepia_uniflora
| References | Reference_title |
|---|---|
| A High-Quality Reference Genome Assembly of Prinsepia uniflora (Rosaceae). |
| Database_name | figshare |
|---|
Prunus_armeniaca
| References | Reference_title |
|---|---|
| Population genomics of apricots unravels domestication history and adaptive events |
| Database_name | GDR |
|---|
Prunus_avium
| References | Reference_title |
|---|---|
| Chromosome-scale genome assembly of sweet cherry (Prunus avium L.) cv. Tieton obtained using long-read and Hi-C sequencing |
| Database_name | NCBI |
|---|
Prunus_campanulata
| References | Reference_title |
|---|---|
| Genome assembly, resequencing and genome-wide association analyses provide novel insights into the origin, evolution and flower colour variations of flowering cherry. |
| Database_name | tree-bio |
|---|
Prunus_domestica
| References | Reference_title |
|---|---|
| Defining the 'HoneySweet' insertion event utilizing NextGen sequencing and a de novo genome assembly of plum (Prunus domestica) |
| Database_name | GDR |
|---|
Prunus_dulcis
| References | Reference_title |
|---|---|
| Transposons played a major role in the diversification between the closely related almond and peach genomes: results from the almond genome sequence |
| Database_name | NCBI |
|---|
Prunus_fruticosa
| References | Reference_title |
|---|---|
| Genome of tetraploid sour cherry (Prunus cerasus L.) Montmorency identifies three distinct ancestral Prunus genomes. |
| Database_name | GDR |
|---|
Prunus_hongpingensis
| References | Reference_title |
|---|---|
| Genomic evidence for evolutionary history and local adaptation of two endemic apricots: Prunus hongpingensis and P. zhengheensis. |
| Database_name | NGDC |
|---|
Prunus_kansuensis
| References | Reference_title |
|---|---|
| Chromosome-level genome assemblies of four wild peach species provide insights into genome evolution and genetic basis of stress resistance |
| Database_name | GDR |
|---|
Prunus_mandshurica
| References | Reference_title |
|---|---|
| Population genomics of apricots unravels domestication history and adaptive events |
| Database_name | GDR |
|---|
Prunus_mira
| References | Reference_title |
|---|---|
| Chromosome-level genome assemblies of four wild peach species provide insights into genome evolution and genetic basis of stress resistance |
| Database_name | GDR |
|---|
Prunus_mongolica
| References | Reference_title |
|---|---|
| Chromosome-level genome assembly of an endangered plant Prunus mongolica using PacBio and Hi-C technologies. |
| Database_name | National Genomics Data Center |
|---|
Prunus_mume
Prunus_persica
| References | Reference_title |
|---|---|
| The Draft Genome of a Flat Peach (Prunus persica L. cv. '124 Pan') Provides Insights into Its Good Fruit Flavor Traits |
| Database_name | Phytozome |
|---|
Prunus_salicina
| References | Reference_title |
|---|---|
| The chromosome-level draft genome of a diploid plum (Prunus salicina) |
| Database_name | GigaDB |
|---|
Prunus_sibirica
| References | Reference_title |
|---|---|
| Population genomics of apricots unravels domestication history and adaptive events |
| Database_name | GDR |
|---|
Prunus_x_kanzakura
| References | Reference_title |
|---|---|
| Genome sequencing and analysis of two early-flowering cherry (Cerasus x kanzakura) varieties, 'Kawazu-zakura' and 'Atami-zakura'. |
| Database_name | PlantGARDEN |
|---|
Prunus_yedoensis
| References | Reference_title |
|---|---|
| Draft genome sequence of wild Prunus yedoensis reveals massive inter-specific hybridization between sympatric flowering cherries |
| Database_name | GDR |
|---|
Prunus_zhengheensis
| References | Reference_title |
|---|---|
| Genomic evidence for evolutionary history and local adaptation of two endemic apricots: Prunus hongpingensis and P. zhengheensis. |
| Database_name | NGDC |
|---|
Pyrus_betulifolia
| References | Reference_title |
|---|---|
| De novo assembly of a wild pear (Pyrus betuleafolia) genome |
| Database_name | NGDC |
|---|
Pyrus_bretschneideri
| References | Reference_title |
|---|---|
| Chromosome level high-density integrated genetic maps improve the Pyrus bretschneideri 'DangshanSuli' v1.0 genome |
| Database_name | GDR |
|---|
Pyrus_communis
| References | Reference_title |
|---|---|
| The Draft Genome Sequence of European Pear (Pyrus communis L. 'Bartlett') |
| Database_name | GDR |
|---|
Pyrus_pyrifolia
| Database_name | GDR |
|---|
Pyrus_ussuriensis_x_communis
| References | Reference_title |
|---|---|
| A de novo genome assembly of the dwarfing pear rootstock Zhongai 1 |
| Database_name | NCBI |
|---|
Rosa_chinensis
| References | Reference_title |
|---|---|
| The Rosa genome provides new insights into the domestication of modern roses |
| Database_name | NCBI |
|---|
Rosa_multiflora
| References | Reference_title |
|---|---|
| Genome structure of Rosa multiflora, a wild ancestor of cultivated roses |
| Database_name | kazusa |
|---|
Rosa_roxburghii
| References | Reference_title |
|---|---|
| Chromosomal-scale genomes of two Rosa species provide insights into genome evolution and ascorbate accumulation. |
| Database_name | CNGB |
|---|
Rosa_rugosa
| References | Reference_title |
|---|---|
| A chromosome-level genome assembly of rugged rose (Rosa rugosa) provides insights into its evolution, ecology, and floral characteristics |
| Database_name | eplant |
|---|
Rosa_wichuraiana
| References | Reference_title |
|---|---|
| Rose without prickle: genomic insights linked to moisture adaptation |
| Database_name | GDR |
|---|
Rubus_argutus
| References | Reference_title |
|---|---|
| A chromosome-length genome assembly and annotation of blackberry (Rubus argutus, cv. 'Hllquist') |
| Database_name | GDR |
|---|
Rubus_chingii
| References | Reference_title |
|---|---|
| The chromosome-scale reference genome of Rubus chingii Hu provides insight into the biosynthetic pathway of hydrolyzable tannins |
| Database_name | GDR |
|---|
Rubus_corchorifolius
| References | Reference_title |
|---|---|
| Genome Assembly and Population Resequencing Reveal the Geographical Divergence of Shanmei (Rubus corchorifolius) |
| Database_name | NGDC |
|---|
Rubus_occidentalis
| References | Reference_title |
|---|---|
| The chromosome-scale reference genome of Rubus chingii Hu provides insight into the biosynthetic pathway of hydrolyzable tannins |
| Database_name | GDR |
|---|
Sorbus_aucuparia
| References | Reference_title |
|---|---|
| Genome sequence and transcriptome of Sorbus pohuashanensis provides insights into population evolution and leaf sunburn response. |
| Database_name | figshare |
|---|
Sorbus_pohuashanensis
| References | Reference_title |
|---|---|
| Genome sequence and transcriptome of Sorbus pohuashanensis provide insights into population evolution and leaf sunburn response |
| Database_name | Figshare |
|---|
Trema_orientalis
Ziziphus_jujuba
| References | Reference_title |
|---|---|
| The complex jujube genome provides insights into fruit tree biology |
| Database_name | NCBI |
|---|
Asclepias_syriaca
| References | Reference_title |
|---|---|
| A draft genome and transcriptome of common milkweed (Asclepias syriaca) as resources for evolutionary, ecological, and molecular studies in milkweeds and Apocynaceae |
| Database_name | Milkweed Genome Project |
|---|
Calotropis_gigantea
| References | Reference_title |
|---|---|
| Genome Assembly and Annotation of the Medicinal Plant Calotropis gigantea, a Producer of Anti-Cancer and Anti-Malarial Cardenolides |
| Database_name | DRYAD |
|---|
Catharanthus_roseus
| References | Reference_title |
|---|---|
| Genome-guided investigation of plant natural product biosynthesis |
| Database_name | Dryad |
|---|
Chiococca_alba
| References | Reference_title |
|---|---|
| Genome assembly of Chiococca alba uncovers key enzymes involved in the biosynthesis of unusual terpenoids. |
| Database_name | DRYAD |
|---|
Cinchona_pubescens
| References | Reference_title |
|---|---|
| A highly contiguous, scaffold-level nuclear genome assembly for the fever tree (Cinchona pubescens Vahl) as a novel resource for Rubiaceae research. |
| Database_name | GigaDB |
|---|
Coffea_arabica
Coffea_canephora
| References | Reference_title |
|---|---|
| The coffee genome provides insight into the convergent evolution of caffeine biosynthesis |
| Database_name | NCBI |
|---|
Eustoma_grandiflorum
| References | Reference_title |
|---|---|
| Chromosome-scale genome assembly of Eustoma grandiflorum, the first complete genome sequence in the genus Eustoma. |
| Database_name | Plant GARDEN |
|---|
Gardenia_jasminoides
| References | Reference_title |
|---|---|
| Tandem gene duplications drive divergent evolution of caffeine and crocin biosynthetic pathways in plants |
| Database_name | CoGe |
|---|
Knoxia_roxburghii
| References | Reference_title |
|---|---|
| A chromosome-level genome assembly of the Knoxia roxburghii (Rubiaceae). |
| Database_name | Figshare |
|---|
Neolamarckia_cadamba
| References | Reference_title |
|---|---|
| Chromosome-level assembly of the Neolamarckia cadamba genome provides insights into the evolution of cadambine biosynthesis |
| Database_name | Figshare |
|---|
Oldenlandia_corymbosa
| References | Reference_title |
|---|---|
| Genomic, transcriptomic, and metabolomic analysis of Oldenlandia corymbosa reveals the biosynthesis and mode of action of anti-cancer metabolites. |
| Database_name | NGDC |
|---|
Ophiorrhiza_pumila
| References | Reference_title |
|---|---|
| Chromosome-level genome assembly of Ophiorrhiza pumila reveals the evolution of camptothecin biosynthesis. |
| Database_name | Plant GARDEN |
|---|
Averrhoa_carambola
| References | Reference_title |
|---|---|
| Dissecting the genome of star fruit (Averrhoa carambola L.) |
| Database_name | NGDC |
|---|
Cephalotus_follicularis
| References | Reference_title |
|---|---|
| Genome of the pitcher plant Cephalotus reveals genetic changes associated with carnivory |
| Database_name | NCBI |
|---|
Balanophora_fungosa
| References | Reference_title |
|---|---|
| Balanophora genomes display massively convergent evolution with other extreme holoparasites and provide novel insights into parasite-host interactions. |
| Database_name | CNSA |
|---|
Balanophora_subcupularis
| References | Reference_title |
|---|---|
| Balanophora genomes display massively convergent evolution with other extreme holoparasites and provide novel insights into parasite-host interactions. |
| Database_name | CNSA |
|---|
Malania_oleifera
| References | Reference_title |
|---|---|
| Genome sequence of Malania oleifera, a tree with great value for nervonic acid production |
| Database_name | GigaDB |
|---|
Santalum_album
| References | Reference_title |
|---|---|
| Chromosome-level genome assemblies from two sandalwood species provide insights into the evolution of the Santalales. |
| Database_name | NGDC |
|---|
Santalum_yasi
| References | Reference_title |
|---|---|
| Chromosome-level genome assemblies from two sandalwood species provide insights into the evolution of the Santalales. |
| Database_name | NGDC |
|---|
Scurrula_parasitica
| References | Reference_title |
|---|---|
| Balanophora genomes display massively convergent evolution with other extreme holoparasites and provide novel insights into parasite-host interactions. |
| Database_name | CNSA |
|---|
Begonia_darthvaderiana
| References | Reference_title |
|---|---|
| Genomes shed light on the evolution of Begonia, a mega-diverse genus |
| Database_name | CNGB |
|---|
Begonia_fuchsioides
| References | Reference_title |
|---|---|
| Phylogenomics reveals multiple losses of nitrogen-fixing root nodule symbiosis |
| Database_name | GigaDB |
|---|
Begonia_loranthoides
| References | Reference_title |
|---|---|
| Genomes shed light on the evolution of Begonia, a mega-diverse genus |
| Database_name | CNGB |
|---|
Begonia_masoniana
| References | Reference_title |
|---|---|
| Genomes shed light on the evolution of Begonia, a mega-diverse genus |
| Database_name | CNGB |
|---|
Begonia_peltatifolia
| References | Reference_title |
|---|---|
| Genomes shed light on the evolution of Begonia, a mega-diverse genus |
| Database_name | CNGB |
|---|
Benincasa_hispida
| References | Reference_title |
|---|---|
| The wax gourd genomes offer insights into the genetic diversity and ancestral cucurbit karyotype |
| Database_name | CuGenDB |
|---|
Citrullus_lanatus
| References | Reference_title |
|---|---|
| The draft genome of watermelon (Citrullus lanatus) and resequencing of 20 diverse accessions |
| Database_name | CuGenDB |
|---|
Cucumis_hystrix
| References | Reference_title |
|---|---|
| Chromosome-scale genome assembly of Cucumis hystrix ——a wild species interspecifically cross-compatible with cultivated cucumber |
| Database_name | Figshare |
|---|
Cucumis_melo
Cucumis_sativus
Cucurbita_argyrosperma
| Database_name | figshare |
|---|
Cucurbita_maxima
| References | Reference_title |
|---|---|
| Karyotype Stability and Unbiased Fractionation in the Paleo-Allotetraploid Cucurbita Genomes |
| Database_name | CuGenDB |
|---|
Cucurbita_moschata
| References | Reference_title |
|---|---|
| Karyotype Stability and Unbiased Fractionation in the Paleo-Allotetraploid Cucurbita Genomes |
| Database_name | CuGenDB |
|---|
Cucurbita_pepo
| References | Reference_title |
|---|---|
| De novo assembly of the zucchini genome reveals a whole-genome duplication associated with the origin of the Cucurbita genus |
| Database_name | CuGenDB |
|---|
Datisca_glomerata
| References | Reference_title |
|---|---|
| Phylogenomics reveals multiple losses of nitrogen-fixing root nodule symbiosis |
| Database_name | GigaDB |
|---|
Herpetospermum_pedunculosum
| References | Reference_title |
|---|---|
| Chromosome-Level Genome Assembly of Herpetospermum pedunculosum (Cucurbitaceae). |
| Database_name | NCBI |
|---|
Lagenaria_siceraria
| References | Reference_title |
|---|---|
| The bottle gourd genome provides insights into Cucurbitaceae evolution and facilitates mapping of a Papaya ring-spot virus resistance locus |
| Database_name | CuGenDB |
|---|
Luffa_acutangula
| References | Reference_title |
|---|---|
| De novo assemblies of Luffa acutangula and Luffa cylindrica genomes reveal an expansion associated with substantial accumulation of transposable elements |
| Database_name | None |
|---|
Luffa_cylindrica
| References | Reference_title |
|---|---|
| Long-read sequencing and de novo assembly of the Luffa cylindrica (L.) Roem. Genome. |
| Database_name | CNSA |
|---|
Momordica_charantia
| References | Reference_title |
|---|---|
| Draft genome sequence of bitter gourd (Momordica charantia), a vegetable and medicinal plant in tropical and subtropical regions. Urasaki N, et al. DNA Res 2017 Feb 1 |
| Database_name | NCBI |
|---|
Sechium_edule
| References | Reference_title |
|---|---|
| Combined genomic, transcriptomic, and metabolomic analyses provide insights into chayote (Sechium edule) evolution and fruit development |
| Database_name | CuGenDB |
|---|
Siraitia_grosvenorii
| References | Reference_title |
|---|---|
| Improved de novo genome assembly and analysis of the Chinese cucurbit Siraitia grosvenorii, also known as monk fruit or luo-han-guo |
| Database_name | GigaDB |
|---|
Trichosanthes_anguina
| References | Reference_title |
|---|---|
| The genome and transcriptome analysis of snake gourd provide insights into its evolution and fruit development and ripening |
| Database_name | CuGenDB |
|---|
Betula_pendula
| References | Reference_title |
|---|---|
| Genome sequencing and population genomic analyses provide insights into the adaptive landscape of silver birch. |
| Database_name | GoGe |
|---|
Betula_platyphylla
Carpinus_fangiana
| References | Reference_title |
|---|---|
| A chromosome-level reference genome of the hornbeam, Carpinus fangiana |
| Database_name | NCBI |
|---|
Carpinus_viminea
| References | Reference_title |
|---|---|
| Genomic evidence for homoploid hybrid speciation between ancestors of two different genera |
| Database_name | Figshare |
|---|
Carya_cathayensis
| References | Reference_title |
|---|---|
| The genomes of pecan and Chinese hickory provide insights into Carya evolution and nut nutrition. |
| Database_name | GigaScience GigaDB |
|---|
Carya_illinoinensis
| References | Reference_title |
|---|---|
| The genomes of pecan and Chinese hickory provide insights into Carya evolution and nut nutrition |
| Database_name | NCBI |
|---|
Castanea_mollissima
| References | Reference_title |
|---|---|
| Hybrid de novo genome assembly of Chinese chestnut (Castanea mollissima) |
| Database_name | NCBI |
|---|
Castanopsis_hystrix
| References | Reference_title |
|---|---|
| A chromosome-scale genome assembly of Castanopsis hystrix provides new insights into the evolution and adaptation of Fagaceae species. |
| Database_name | NGDC |
|---|
Castanopsis_tibetana
| References | Reference_title |
|---|---|
| Chromosome-scale genome assembly of Castanopsis tibetana provides a powerful comparative framework to study the evolution and adaptation of Fagaceae trees |
| Database_name | CNGB |
|---|
Corylus_avellana
| References | Reference_title |
|---|---|
| A chromosome-scale genome assembly of European hazel (Corylus avellana L.) reveals targets for crop improvement |
| Database_name | HWG |
|---|
Corylus_mandshurica
| References | Reference_title |
|---|---|
| The Corylus mandshurica genome provides insights into the evolution of Betulaceae genomes and hazelnut breeding |
| Database_name | Figshare |
|---|
Cyclocarya_paliurus
| References | Reference_title |
|---|---|
| Insights into the evolution and hypoglycemic metabolite biosynthesis of autotetraploid Cyclocarya paliurus by combining genomic, transcriptomic and metabolomic analyses |
| Database_name | NGDC |
|---|
Juglans_mandshurica
| References | Reference_title |
|---|---|
| The Manchurian Walnut Genome: Insights into Juglone and Lipid Biosynthesis. |
| Database_name | GigaScience GigaDB |
|---|
Juglans_regia
| References | Reference_title |
|---|---|
| High-quality chromosome-scale assembly of the walnut (Juglans regia L.) reference genome |
| Database_name | NCBI |
|---|
Juglans_sigillata
| References | Reference_title |
|---|---|
| Chromosomal-level assembly of Juglans sigillata genome using Nanopore, BioNano, and Hi-C analysis |
| Database_name | GigaDB |
|---|
Morella_rubra
| References | Reference_title |
|---|---|
| Genome sequencing provides insights into the evolution and antioxidant activity of Chinese bayberry |
| Database_name | NCBI |
|---|
Ostrya_rehderiana
| References | Reference_title |
|---|---|
| Genomic evidence for homoploid hybrid speciation between ancestors of two different genera |
| Database_name | Figshare |
|---|
Quercus_acutissima
| References | Reference_title |
|---|---|
| Genome-wide analyses of introgression between two sympatric Asian oak species |
| Database_name | NGDC |
|---|
Quercus_dentata
| References | Reference_title |
|---|---|
| Chromosome-scale genome assembly and insights into the metabolome and gene regulation of leaf color transition in an important oak species, Quercus dentata. |
| Database_name | NGDC |
|---|
Quercus_gilva
| References | Reference_title |
|---|---|
| A chromosome-scale genome assembly of Quercus gilva: Insights into the evolution of Quercus section Cyclobalanopsis (Fagaceae). |
| Database_name | figshare |
|---|
Quercus_lobata
| References | Reference_title |
|---|---|
| First Draft Assembly and Annotation of the Genome of a California Endemic Oak Quercus lobata Nee (Fagaceae) |
| Database_name | NCBI |
|---|
Quercus_mongolica
| References | Reference_title |
|---|---|
| A chromosome-scale genome assembly of the Mongolian oak (Quercus mongolica). |
| Database_name | figshare |
|---|
Quercus_robur
| References | Reference_title |
|---|---|
| Oak genome reveals facets of long lifespan |
| Database_name | OAK GENOME SEQUENCING |
|---|
Quercus_suber
Quercus_variabilis
| References | Reference_title |
|---|---|
| A chromosome-level genome assembly of the Chinese cork oak (Quercus variabilis) |
| Database_name | CNGB |
|---|
Bruguiera_sexangula
| References | Reference_title |
|---|---|
| De Novo Reference Assembly of the Upriver Orange Mangrove (Bruguiera sexangula) Genome |
| Database_name | Figshare |
|---|
Ceriops_tagal
| References | Reference_title |
|---|---|
| Chromosome-level genome assembly of Indian mangrove (Ceriops tagal) revealed a genome-wide duplication event predating the divergence of Rhizophoraceae mangrove species. |
| Database_name | National Omics Center |
|---|
Cladopus_chinensis
| References | Reference_title |
|---|---|
| A high-quality genome provides insights into the new taxonomic status and genomic characteristics of Cladopus chinensis (Podostemaceae). |
| Database_name | NGDC |
|---|
Erythroxylum_novogranatense
| References | Reference_title |
|---|---|
| Genomic and structural basis for evolution of tropane alkaloid biosynthesis. |
| Database_name | NCBI |
|---|
Euphorbia_lathyris
| References | Reference_title |
|---|---|
| High-quality genome assembly of an important biodiesel plant, Euphorbia lathyris L |
| Database_name | Figshare |
|---|
Hevea_brasiliensis
| References | Reference_title |
|---|---|
| The Chromosome-Based Rubber Tree Genome Provides New Insights into Spurge Genome Evolution and Rubber Biosynthesis |
| Database_name | NCBI |
|---|
Jatropha_curcas
| References | Reference_title |
|---|---|
| Genome sequence of Jatropha curcas L., a non-edible biodiesel plant, provides a resource to improve seed-related traits |
| Database_name | NCBI |
|---|
Kandelia_obovata
| References | Reference_title |
|---|---|
| Chromosome-scale assembly of the Kandelia obovata genome |
| Database_name | NGDC |
|---|
Manihot_esculenta
| References | Reference_title |
|---|---|
| Cassava genome from a wild ancestor to cultivated varieties |
| Database_name | JGI |
|---|
Mesua_ferrea
| References | Reference_title |
|---|---|
| Chromosome-scale genomes of commercial timber trees (Ochroma pyramidale, Mesua ferrea, and Tectona grandis). |
| Database_name | figshare |
|---|
Passiflora_organensis
| References | Reference_title |
|---|---|
| A genome sequence resource for the genus Passiflora, the genome of the wild diploid species Passiflora organensis. |
| Database_name | GoGe |
|---|
Populus_alba
| References | Reference_title |
|---|---|
| High Level of Conservation of Mitochondrial RNA Editing Sites Among Four Populus Species |
| Database_name | NCBI |
|---|
Populus_deltoides
| References | Reference_title |
|---|---|
| Genome Assembly of Salicaceae Populus deltoides (Eastern Cottonwood) I-69 Based on Nanopore Sequencing and Hi-C Technologies. |
| Database_name | NCBI |
|---|
Populus_euphratica
| References | Reference_title |
|---|---|
| The complete chloroplast genome sequence of desert poplar |
| Database_name | NCBI |
|---|
Populus_glandulosa
| References | Reference_title |
|---|---|
| The genome of Populus alba x Populus tremula var. glandulosa clone 84K |
| Database_name | CNSA |
|---|
Populus_glandulosa_x_alba
| References | Reference_title |
|---|---|
| The genome of Populus alba x Populus tremula var. glandulosa clone 84K |
| Database_name | CNSA |
|---|
Populus_ilicifolia
| References | Reference_title |
|---|---|
| Survival in the Tropics despite isolation, inbreeding and asexual reproduction: insights from the genome of the world's southernmost poplar (Populus ilicifolia). |
| Database_name | NGDC |
|---|
Populus_pruinosa
| References | Reference_title |
|---|---|
| The draft genome sequence of a desert tree Populus pruinosa |
| Database_name | GigaDB |
|---|
Populus_tremula
| References | Reference_title |
|---|---|
| Chromosome-level genome assembly of the Asian aspen Populus davidiana Dode. |
| Database_name | figshare |
|---|
Populus_trichocarpa
| References | Reference_title |
|---|---|
| The Genome of Black Cottonwood, Populus trichocarpa (Torr. & Gray) |
| Database_name | Phytozome |
|---|
Populus_wilsonii
| References | Reference_title |
|---|---|
| Chromosome-scale genome assembly provides insights into the molecular mechanisms of tissue development of Populus wilsonii |
| Database_name | figshare |
|---|
Ricinus_communis
| References | Reference_title |
|---|---|
| Resolution of deep eudicot phylogeny and their temporal diversification using nuclear genes from transcriptomic and genomic datasets |
| Database_name | Phytozome |
|---|
Salix_arbutifolia
| References | Reference_title |
|---|---|
| Repeated turnovers keep sex chromosomes young in willows |
| Database_name | NGDC |
|---|
Salix_brachista
| References | Reference_title |
|---|---|
| Genome-wide analysis of Cushion willow provides insights into alpine plant divergence in a biodiversity hotspot |
| Database_name | NCBI |
|---|
Salix_chaenomeloides
| References | Reference_title |
|---|---|
| Repeated turnovers keep sex chromosomes young in willows |
| Database_name | NGDC |
|---|
Salix_integra
| References | Reference_title |
|---|---|
| De Novo Assembly and Annotation of 11 Diverse Shrub Willow ( Salix) Genomes Reveals Novel Gene Organization in Sex-Linked Regions. |
| Database_name | NCBI |
|---|
Salix_koriyanagi
| References | Reference_title |
|---|---|
| De Novo Assembly and Annotation of 11 Diverse Shrub Willow ( Salix) Genomes Reveals Novel Gene Organization in Sex-Linked Regions. |
| Database_name | NCBI |
|---|
Salix_purpurea
| References | Reference_title |
|---|---|
| De Novo Assembly and Annotation of 11 Diverse Shrub Willow ( Salix) Genomes Reveals Novel Gene Organization in Sex-Linked Regions. |
| Database_name | DRYAD |
|---|
Salix_suchowensis
| References | Reference_title |
|---|---|
| The chromosome-scale assembly of the willow genome provides insight into Salicaceae genome evolution |
| Database_name | NCBI |
|---|
Speranskia_yunnanensis
| References | Reference_title |
|---|---|
| Chromosome-Level Genome Assembly of the Rare and Endangered Tropical Plant Speranskia yunnanensis (Euphorbiaceae) |
| Database_name | Figshare |
|---|
Buxus_austroyunnanensis
| References | Reference_title |
|---|---|
| A high-quality Buxus austro-yunnanensis (Buxales) genome provides new insights into karyotype evolution in early eudicots |
| Database_name | NGDC |
|---|
Buxus_sinica
| References | Reference_title |
|---|---|
| Buxus and Tetracentron genomes help resolve eudicot genome history |
| Database_name | Dryad |
|---|
Camptotheca_acuminata
| References | Reference_title |
|---|---|
| De novo genome assembly of Camptotheca acuminata, a natural source of the anti-cancer compound camptothecin |
| Database_name | Dryad |
|---|
Cornus_wilsoniana
| References | Reference_title |
|---|---|
| A chromosome-level genome assembly provides insights into Cornus wilsoniana evolution, oil biosynthesis and floral bud development. |
| Database_name | NGDC |
|---|
Davidia_involucrata
| References | Reference_title |
|---|---|
| Genomic analyses of a living fossil: The endangered dove-tree. |
| Database_name | NGDC |
|---|
Nyssa_sinensis
| References | Reference_title |
|---|---|
| A chromosome-level genome assembly of the Chinese tupelo Nyssa sinensis |
| Database_name | NCBI |
|---|
Nyssa_yunnanensis
| References | Reference_title |
|---|---|
| The draft genome assembly of the critically endangered Nyssa yunnanensis, a plant species with extremely small populations endemic to Yunnan Province, China. |
| Database_name | GigaDB |
|---|
Ceratophyllum_demersum
| References | Reference_title |
|---|---|
| Prickly waterlily and rigid hornwort genomes shed light on early angiosperm evolution |
| Database_name | CoGe |
|---|
Chloranthus_sessilifolius
| References | Reference_title |
|---|---|
| The Chloranthus sessilifolius genome provides insight into early diversification of angiosperms |
| Database_name | GitHub |
|---|
Cissus_rotundifolia
| References | Reference_title |
|---|---|
| A genome for Cissus illustrates features underlying its evolutionary success in dry savannas |
| Database_name | NGDC |
|---|
Vitis_amurensis
| References | Reference_title |
|---|---|
| The genome of Shanputao (Vitis amurensis) provides a new insight into cold tolerance of grapevine |
| Database_name | grapeworld |
|---|
Vitis_arizonica
| References | Reference_title |
|---|---|
| Introgression among North American wild grapes (Vitis) fuels biotic and abiotic adaptation. |
| Database_name | grapegenomics.com |
|---|
Vitis_berlandieri
| References | Reference_title |
|---|---|
| HiFi chromosome-scale diploid assemblies of the grape rootstocks 110R, Kober 5BB, and 101-14 Mgt |
| Database_name | Zenodo |
|---|
Vitis_labrusca
| References | Reference_title |
|---|---|
| Vitis labrusca genome assembly reveals diversification between wild and cultivated grapevine genomes. |
| Database_name | figshare |
|---|
Vitis_riparia
| References | Reference_title |
|---|---|
| HiFi chromosome-scale diploid assemblies of the grape rootstocks 110R, Kober 5BB, and 101-14 Mgt |
| Database_name | Zenodo |
|---|
Vitis_rotundifolia
| References | Reference_title |
|---|---|
| Long-read, chromosome-scale assembly of Vitis rotundifolia cv. Carlos and its unique resistance to Xylella fastidiosa subsp. fastidiosa. |
| Database_name | NCBI |
|---|
Vitis_rupestris
| References | Reference_title |
|---|---|
| HiFi chromosome-scale diploid assemblies of the grape rootstocks 110R, Kober 5BB, and 101-14 Mgt |
| Database_name | Zenodo |
|---|
Vitis_vinifera
| References | Reference_title |
|---|---|
| The wild grape genome sequence provides insights into the transition from dioecy to hermaphroditism during grape domestication |
| Database_name | Phytozome |
|---|
Vitis_xlabruscana
| References | Reference_title |
|---|---|
| De novo whole-genome assembly in an interspecific hybrid table grape, 'Shine Muscat' |
| Database_name | Plant GARDEN |
|---|
Eucalyptus_grandis
Lagerstroemia_indica
| References | Reference_title |
|---|---|
| Genome assembly and resequencing analyses provide new insights into the evolution and ornamental traits of crape myrtle. |
| Database_name | NGDC |
|---|
Melaleuca_alternifolia
| References | Reference_title |
|---|---|
| A high-quality draft genome for Melaleuca alternifolia (tea tree): a new platform for evolutionary genomics of myrtaceous terpene-rich species |
| Database_name | GigaDB |
|---|
Melastoma_dodecandrum
| References | Reference_title |
|---|---|
| The Melastoma dodecandrum genome and the evolution of Myrtales. |
| Database_name | NGDC |
|---|
Punica_granatum
| References | Reference_title |
|---|---|
| The pomegranate (Punica granatum L.) draft genome dissects genetic divergence between soft- and hard-seeded cultivars |
| Database_name | NCBI |
|---|
Syzygium_grande
| References | Reference_title |
|---|---|
| Genomic insights into rapid speciation within the world 's largest tree genus Syzygium |
| Database_name | CoGe |
|---|
Eucommia_ulmoides
| References | Reference_title |
|---|---|
| The Hardy Rubber Tree Genome Provides Insights into the Evolution of Polyisoprene Biosynthesis |
| Database_name | CNGB |
|---|
Euscaphis_japonica
| References | Reference_title |
|---|---|
| The Euscaphis japonica genome and the evolution of malvids. |
| Database_name | NGDC |
|---|
Ilex_latifolia
| References | Reference_title |
|---|---|
| The chromosome-level holly (Ilex latifolia) genome reveals key enzymes in triterpenoid saponin biosynthesis and fruit color change. |
| Database_name | NGDC |
|---|
Ilex_polyneura
| References | Reference_title |
|---|---|
| A chromosome-scale genome assembly for the holly (Ilex polyneura) provides insights into genomic adaptations to elevation in Southwest China |
| Database_name | CNGB |
|---|
Kalanchoe_fedtschenkoi
| References | Reference_title |
|---|---|
| The Kalancho毛 genome provides insights into convergent evolution and building blocks of crassulacean acid metabolism |
| Database_name | Phytozome |
|---|
Paeonia_ludlowii
| References | Reference_title |
|---|---|
| High-quality assembly and methylome of a Tibetan wild tree peony genome (Paeonia ludlowii) reveal the evolution of giant genome architecture. |
| Database_name | figshare |
|---|
Paeonia_ostii
| References | Reference_title |
|---|---|
| Genomic basis of the giga-chromosomes and giga-genome of tree peony Paeonia ostii |
| Database_name | CNGB |
|---|
Paeonia_suffruticosa
| References | Reference_title |
|---|---|
| Draft genome of the famous ornamental plant Paeonia suffruticosa |
| Database_name | CNGB |
|---|
Rhodiola_crenulata
| References | Reference_title |
|---|---|
| Draft genome sequence of the Tibetan medicinal herb Rhodiola crenulata |
| Database_name | GigaDB |
|---|
Tiarella_polyphylla
| References | Reference_title |
|---|---|
| Phylogenomic and syntenic data demonstrate complex evolutionary processes in early radiation of the rosids. |
| Database_name | CNGB |
|---|
Lithospermum_erythrorhizon
| References | Reference_title |
|---|---|
| Hybrid de novo genome assembly of red gromwell (Lithospermum erythrorhizon) reveals evolutionary insight into shikonin biosynthesis. |
| Database_name | NCBI |
|---|
Lonicera_japonica
| References | Reference_title |
|---|---|
| The honeysuckle genome provides insight into the molecular mechanism of carotenoid metabolism underlying dynamic flower coloration |
| Database_name | CNGB |
|---|
Macadamia_integrifolia
| References | Reference_title |
|---|---|
| Signatures of selection in recently domesticated macadamia |
| Database_name | NGDC |
|---|
Nelumbo_nucifera
| Database_name | NCBI |
|---|
Protea_cynaroides
Telopea_speciosissima
| References | Reference_title |
|---|---|
| Chromosome-level de novo genome assembly of Telopea speciosissima (New South Wales waratah) using long-reads, linked-reads and Hi-C |
| Database_name | NCBI |
|---|
Tetracentron_sinense
| References | Reference_title |
|---|---|
| A chromosome-level genome assembly for the tertiary relict plant Tetracentron sinense oliv. (trochodendraceae) |
| Database_name | NCBI |
|---|
Trochodendron_aralioides
| Number | Species | Version |
|---|---|---|
| 2 | Trochodendron_aralioides | v1.0 |
| Order | Family |
|---|---|
| Trochodendrales | Trochodendraceae |
| References | Reference_title |
|---|---|
| Trochodendron aralioides, the first chromosome-level draft genome in Trochodendrales and a valuable resource for basal eudicot research. |
| Database_name | GigaDB |
|---|
Tripterygium_wilfordii
| References | Reference_title |
|---|---|
| Genome of Tripterygium wilfordii and identification of cytochrome P450 involved in triptolide biosynthesis |
| Database_name | NCBI |
|---|
