Welcome to Solanaceae Information Resource

The Solanaceae Information Resource (SoIR) provides comprehensive services for 81 Solanaceae plants, offering genome assemblies, gene models, and annotations. Additionally, the SoIR database enables searches for syntenic genes, Pan-genome data, CRISPR guide sequences, m6A genes, orthologous and paralogous genes, transcription factors, and several important functional genes. To facilitate systematic analysis of Solanaceae plants, the SoIR database includes tools such as Blast, Hmmsearch, Synteny, Primer Design, Jbrowse and Sequence Alignment. The database is continuously updated and improved as new genome data becomes available.

S. candolleanum S. tuberosum S. stenotomum S. commersonii S. ochranthum S. pennellii S. lycopersicum S. etuberosum S. muricatum S. seaforthianum S. septemlobum S. spirale S. atropurpureum S. wrightii S. torvum S. melongena S. macrocarpon S. retroflexum S. laciniatum C. annuum C. baccatum C. pubescens L. biflora I. cyaneum T. anomalum P. pubescens P. pruinosa P. grisea D. inoxia D. stramonium A. acutangulus A. belladonna N. attenuata N. benthamiana N. tabacum V. vinifera 2.585 9.343 2.549 2.559 2.602 9.382 9.390 10.068 15.377 18.342 23.900 118.000 2569 / 7412 6223 / 2692 16803 / 16472 992 / 2774 15784 / 2064 1161 / 4935 4211 / 7019 3929 / 2055 1387 / 4283 4799 / 3675 1928 / 12855 1272 / 2195 12747 / 6449 837 / 2940 1383 / 3546 1828 / 2572 2032 / 4516 1666 / 2821 1589 / 2975 18123 / 16620 2328 / 2274 1206 / 3314 1232 / 4495 1329 / 6084 2522 / 10952 12762 / 8573 1634 / 7419 260 / 121 298 / 73 1068 / 1689 865 / 2262 1428 / 5562 12665 / 1501 3537 / 4574 1743 / 36990 1131 / 12920 0 / 0 0 / 0 0 / 0 0 / 0 0 / 0 0 / 0 Solanum Capsicum Lycianthes Tubocapsicum Iochroma Physalis Datura Anisodus Atropa Nicotiana WGT WGD Genome fusion Expansion / Contraction MRCA 49437
Solanaceae Information Resource (SOIR) Help Tools Database manual Synteny Blast Primer design Hmmearch Protein sequences Nucleic acid sequences Resources Species information Database Chromosome level Species figures Genome information References Data download database Contact Address Email Browse Functional genes Gene annotations Phytohormones Flowering genes Resistence genes Anthocyanin genes Transcription factors (TF) TF family chart TF information N6-methyladenosine (m6A) Pfam domain Swiss-Port TrEMBL Nr Gene Ontology Description CRISPR Guide sequences Duplication type Homologs Orthologs information Orthologs tree Synteny Species introduction database Search Genome synteny Dotplot Blocks Genome data Species information Submit species RNA-Seq Gene blocks circos Retention line chart Expression heat map Phone Charts Dotplot Blocks Genome GFF Protein Download CDS Annotation Simplify GFF Home News Visits Time tree Ks curve chart Karyotype evolution Jbrowse Sequence alignment Expansion/Contraction Pan-Genome Gene cluster All species Potato Tomato Structural variations Potato Tomato Methylation 5-methyladenosine Histone H3 Analysis methods Synteny and rearrangements Potato Tomato

Project Timeline

1. Project start: May 2023

2. Data collection and analysis: June 2023

3. Build Browse: July 2023

4. Build Pan-genome: August 2023

5. Build Search: September 2023

6. Build Tools: October 2023

7. Build Others: December 2023

8. Website online: January 2024

9. Add Pan-genome: March 2024

10. Add Jbrowse and Sequence Alignment tools: March 2024

11. Add species display page: April 2024

12. Optimize interactive function of SVG images: May 2024






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